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BioC 3.2: BUILD BIN report for xps on perceval

This page was generated on 2015-11-10 14:45:59 -0800 (Tue, 10 Nov 2015).

Package 1101/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
xps 1.30.0
Christian Stratowa
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/xps
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: xps
Version: 1.30.0
Command: rm -rf xps.buildbin-libdir && mkdir xps.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh xps_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R xps.buildbin-libdir
StartedAt: 2015-11-10 11:52:41 -0800 (Tue, 10 Nov 2015)
EndedAt: 2015-11-10 11:54:17 -0800 (Tue, 10 Nov 2015)
EllapsedTime: 95.8 seconds
RetCode: 0
Status:  OK 
PackageFile: xps_1.30.0.tgz
PackageFileSize: 5.655 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf xps.buildbin-libdir && mkdir xps.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh xps_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R xps.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=xps.buildbin-libdir xps_1.30.0.tar.gz'
>>>>>>> 

* installing *source* package ‘xps’ ...
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... llvm-gcc-4.2 -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.34/05 in directory /usr/local/root
** libs
** arch - 
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c TMLMath.cxx
TMLMath.cxx:1111:1: warning: "xmax" redefined
TMLMath.cxx:1062:1: warning: this is the location of the previous definition
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c TStat.cxx
In file included from TStat.cxx:55:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c StatUtils.cxx
In file included from StatUtils.cxx:60:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
StatUtils.cxx:242: warning: unused parameter ‘df’
StatUtils.cxx:266: warning: unused parameter ‘df’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSBase.cxx
In file included from XPSBase.cxx:103:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSUtils.cxx
In file included from XPSUtils.cxx:82:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSUtils.cxx:1335: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1335: warning: unused parameter ‘treename’
XPSUtils.cxx:1335: warning: unused parameter ‘varexp’
XPSUtils.cxx:1335: warning: unused parameter ‘selection’
XPSUtils.cxx:1335: warning: unused parameter ‘opt’
XPSUtils.cxx:1724: warning: unused parameter ‘min’
XPSUtils.cxx:1724: warning: unused parameter ‘max’
XPSUtils.cxx:2119: warning: unused parameter ‘n’
XPSUtils.cxx:2119: warning: unused parameter ‘x’
XPSUtils.cxx:2119: warning: unused parameter ‘y’
XPSUtils.cxx:2119: warning: unused parameter ‘z’
XPSUtils.cxx:2119: warning: unused parameter ‘opt’
XPSUtils.cxx:2627: warning: unused parameter ‘index’
XPSUtils.cxx:3080: warning: unused parameter ‘n’
XPSUtils.cxx:3080: warning: unused parameter ‘colors’
XPSUtils.cxx:3080: warning: unused parameter ‘priority’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSSchemes.cxx
In file included from XPSSchemes.h:41,
                 from XPSSchemes.cxx:74:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
XPSSchemes.cxx:10096: warning: unused parameter ‘index’
XPSSchemes.cxx:10107: warning: unused parameter ‘index’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSDataTypes.cxx
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:49:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSData.cxx
In file included from XPSSchemes.h:41,
                 from XPSData.h:43,
                 from XPSData.cxx:82:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSData.cxx:82:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:82:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSData.cxx:84:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSData.cxx:506: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ExportMaskTreeInfo(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSData.cxx:1799: warning: unused variable ‘err’
XPSData.cxx: At global scope:
XPSData.cxx:1794: warning: unused parameter ‘n’
XPSData.cxx:1794: warning: unused parameter ‘names’
XPSData.cxx:1794: warning: unused parameter ‘varlist’
XPSData.cxx:1794: warning: unused parameter ‘output’
XPSData.cxx:1794: warning: unused parameter ‘sep’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2812: warning: unused variable ‘fNMasked’
XPSData.cxx:2822: warning: unused variable ‘fNOutlier’
XPSData.cxx:2832: warning: unused variable ‘fNModified’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSProcessing.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSProcessing.cxx:71:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:71:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:71:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSProcessing.cxx:73:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSProcessing.cxx:788: warning: unused parameter ‘name’
XPSProcessing.cxx: In member function ‘virtual Int_t XProcesSet::ExportMaskTreeInfo(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSProcessing.cxx:1532: warning: unused variable ‘err’
XPSProcessing.cxx: At global scope:
XPSProcessing.cxx:1527: warning: unused parameter ‘n’
XPSProcessing.cxx:1527: warning: unused parameter ‘names’
XPSProcessing.cxx:1527: warning: unused parameter ‘varlist’
XPSProcessing.cxx:1527: warning: unused parameter ‘output’
XPSProcessing.cxx:1527: warning: unused parameter ‘sep’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSHybridizer.cxx
In file included from XPSHybridizer.cxx:66:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:67:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:67:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:67:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSHybridizer.cxx:67:
XPSHybridizer.h:178: warning: unused parameter ‘n’
XPSHybridizer.h:178: warning: unused parameter ‘x’
XPSHybridizer.h:178: warning: unused parameter ‘y’
XPSHybridizer.h:178: warning: unused parameter ‘z’
XPSHybridizer.h:178: warning: unused parameter ‘dx’
XPSHybridizer.h:178: warning: unused parameter ‘dy’
XPSHybridizer.h:178: warning: unused parameter ‘idx’
XPSHybridizer.h:178: warning: unused parameter ‘nsub’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.cxx:750: warning: unused parameter ‘msk’
XPSHybridizer.cxx:1874: warning: unused parameter ‘num’
XPSHybridizer.cxx:1987: warning: unused parameter ‘num’
XPSHybridizer.cxx:2170: warning: unused parameter ‘value1’
XPSHybridizer.cxx:2170: warning: unused parameter ‘value2’
XPSHybridizer.cxx:2170: warning: unused parameter ‘num’
XPSHybridizer.cxx:2294: warning: unused parameter ‘num’
XPSHybridizer.cxx:2554: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2598: warning: unused parameter ‘x’
XPSHybridizer.cxx:2598: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2786: warning: unused parameter ‘x’
XPSHybridizer.cxx:2786: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3833: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3893: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4466: warning: unused parameter ‘msk’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSSelector.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:54:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:54:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:54:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSSelector.cxx:54:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
XPSSelector.cxx:318: warning: unused parameter ‘max’
XPSSelector.cxx:318: warning: unused parameter ‘showGraph’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSNormalizer.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:65:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:65:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:65:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSNormalizer.cxx:66:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSNormalizer.cxx:536: warning: unused parameter ‘xout’
XPSNormalizer.cxx:613: warning: unused parameter ‘xout’
XPSNormalizer.cxx:692: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1132: warning: unused parameter ‘n’
XPSNormalizer.cxx:1163: warning: unused parameter ‘n’
XPSNormalizer.cxx:1300: warning: unused parameter ‘x’
XPSNormalizer.cxx:1300: warning: unused parameter ‘msk’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSPreProcessing.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:95:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:95:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:95:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:95:
XPSPreProcessing.h:324: warning: ‘virtual Int_t XPreProcesSet::QualityControl(Int_t, TTree**, Int_t&, TTree**)’ was hidden
XPSPreProcessing.h:395: warning:   by ‘virtual Int_t XGCProcesSet::QualityControl(Int_t, TTree**, Int_t, TTree**, const char*)’
In file included from XPSPreProcessing.cxx:96:
XPSHybridizer.h:178: warning: unused parameter ‘n’
XPSHybridizer.h:178: warning: unused parameter ‘x’
XPSHybridizer.h:178: warning: unused parameter ‘y’
XPSHybridizer.h:178: warning: unused parameter ‘z’
XPSHybridizer.h:178: warning: unused parameter ‘dx’
XPSHybridizer.h:178: warning: unused parameter ‘dy’
XPSHybridizer.h:178: warning: unused parameter ‘idx’
XPSHybridizer.h:178: warning: unused parameter ‘nsub’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
In file included from XPSPreProcessing.cxx:97:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSPreProcessing.cxx:99:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoBorderElements(Int_t, TTree**, TTree**, XDNAChip*, TFile*)’:
XPSPreProcessing.cxx:3524: warning: unused variable ‘idxhi’
XPSPreProcessing.cxx:3524: warning: unused variable ‘idxlo’
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:3511: warning: unused parameter ‘file’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoBgrdQualityControl(Int_t, TTree**, XDNAChip*, TFile*)’:
XPSPreProcessing.cxx:3679: warning: unused variable ‘numunits’
XPSPreProcessing.cxx:3680: warning: unused variable ‘size’
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:3670: warning: unused parameter ‘numbgrd’
XPSPreProcessing.cxx:3670: warning: unused parameter ‘bgrdtree’
XPSPreProcessing.cxx:3670: warning: unused parameter ‘file’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::ExportQualTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSPreProcessing.cxx:6771: warning: unused variable ‘idxstr’
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:7990: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:7990: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:8086: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:8106: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:8608: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘TTree* XGCProcesSet::FillDataTree(TTree*, const char*, XAlgorithm*, Int_t, Int_t, Double_t*, Double_t*)’:
XPSPreProcessing.cxx:8746: warning: label ‘cleanup’ defined but not used
XPSPreProcessing.cxx: In member function ‘virtual Int_t XExonProcesSet::DoSpliceExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:9791: warning: unused variable ‘numatoms’
XPSPreProcessing.cxx:9398: warning: unused variable ‘x’
XPSPreProcessing.cxx:9399: warning: unused variable ‘y’
XPSPreProcessing.cxx:9404: warning: unused variable ‘stepout’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:10358: warning: unused variable ‘scheme_ptr_ptr’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSNormation.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:72:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:72:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:72:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:73:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSNormation.cxx:75:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
XPSNormation.cxx:184: warning: unused parameter ‘infile’
XPSNormation.cxx:1021: warning: unused parameter ‘method’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSFilter.cxx
In file included from XPSFilter.h:49,
                 from XPSFilter.cxx:46:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:46:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:46:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:46:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:46:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:623: warning: unused parameter ‘sepo’
XPSFilter.cxx:1353: warning: unused parameter ‘table’
XPSFilter.cxx:1632: warning: unused parameter ‘infile’
XPSFilter.cxx:1632: warning: unused parameter ‘outfile’
XPSFilter.cxx:1632: warning: unused parameter ‘varlist’
XPSFilter.cxx:1632: warning: unused parameter ‘nrows’
XPSFilter.cxx:1632: warning: unused parameter ‘sepi’
XPSFilter.cxx:1632: warning: unused parameter ‘sepo’
XPSFilter.cxx:1632: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1789: warning: unused variable ‘brchUnit’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1659: warning: unused parameter ‘leafname’
XPSFilter.cxx:1841: warning: unused parameter ‘outtree’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSAnalyzer.cxx
In file included from XPSSchemes.h:41,
                 from XPSProcessing.h:42,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:44:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:44:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:44:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
XPSAnalyzer.cxx:215: warning: unused parameter ‘type’
XPSAnalyzer.cxx:215: warning: unused parameter ‘options’
XPSAnalyzer.cxx:215: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:215: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:229: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:229: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:229: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:229: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:229: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:229: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:229: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:229: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:229: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:229: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:241: warning: unused parameter ‘n’
XPSAnalyzer.cxx:241: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:241: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:241: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:241: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:241: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:241: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:241: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:290: warning: unused parameter ‘type’
XPSAnalyzer.cxx:290: warning: unused parameter ‘options’
XPSAnalyzer.cxx:290: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:290: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:304: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:304: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:304: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:304: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:304: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:304: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:304: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:304: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:304: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:304: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:316: warning: unused parameter ‘n’
XPSAnalyzer.cxx:316: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:316: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:316: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:316: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:316: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:316: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:316: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:365: warning: unused parameter ‘type’
XPSAnalyzer.cxx:365: warning: unused parameter ‘options’
XPSAnalyzer.cxx:365: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:365: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:379: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:379: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:379: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:379: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:379: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:379: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:379: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:379: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:379: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:379: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:391: warning: unused parameter ‘n’
XPSAnalyzer.cxx:391: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:391: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:391: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:391: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:391: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:391: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:391: warning: unused parameter ‘mu’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c XPSAnalysis.cxx
In file included from XPSSchemes.h:41,
                 from XPSAnalysis.h:41,
                 from XPSAnalysis.cxx:65:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:65:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:65:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from XPSFilter.h:49,
                 from XPSAnalysis.cxx:66:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
In file included from XPSAnalysis.cxx:66:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:268: warning: unused parameter ‘infile’
XPSAnalysis.cxx:446: warning: unused parameter ‘type’
XPSAnalysis.cxx:966: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:966: warning: unused parameter ‘tree’
XPSAnalysis.cxx:966: warning: unused parameter ‘n’
XPSAnalysis.cxx:966: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1711: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1711: warning: unused parameter ‘n’
XPSAnalysis.cxx:1711: warning: unused parameter ‘names’
XPSAnalysis.cxx:1711: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1711: warning: unused parameter ‘output’
XPSAnalysis.cxx:1711: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2003: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2003: warning: unused parameter ‘n’
XPSAnalysis.cxx:2003: warning: unused parameter ‘names’
XPSAnalysis.cxx:2003: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2003: warning: unused parameter ‘output’
XPSAnalysis.cxx:2003: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2656: warning: unused parameter ‘n’
XPSAnalysis.cxx:2656: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2793: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2793: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2793: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2821: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2821: warning: unused parameter ‘n’
XPSAnalysis.cxx:2821: warning: unused parameter ‘names’
XPSAnalysis.cxx:2821: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2821: warning: unused parameter ‘output’
XPSAnalysis.cxx:2821: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2869: warning: unused parameter ‘n’
XPSAnalysis.cxx:2869: warning: unused parameter ‘names’
XPSAnalysis.cxx:2869: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2869: warning: unused parameter ‘output’
XPSAnalysis.cxx:2869: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2938: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2938: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2938: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2966: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2966: warning: unused parameter ‘n’
XPSAnalysis.cxx:2966: warning: unused parameter ‘names’
XPSAnalysis.cxx:2966: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2966: warning: unused parameter ‘output’
XPSAnalysis.cxx:2966: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3077: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3077: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3077: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3105: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3105: warning: unused parameter ‘n’
XPSAnalysis.cxx:3105: warning: unused parameter ‘names’
XPSAnalysis.cxx:3105: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3105: warning: unused parameter ‘output’
XPSAnalysis.cxx:3105: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c rwrapper.cxx
In file included from rwrapper.cxx:44:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from XPSData.h:47,
                 from rwrapper.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:47:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from rwrapper.cxx:48:
XPSPreProcessing.h:324: warning: ‘virtual Int_t XPreProcesSet::QualityControl(Int_t, TTree**, Int_t&, TTree**)’ was hidden
XPSPreProcessing.h:395: warning:   by ‘virtual Int_t XGCProcesSet::QualityControl(Int_t, TTree**, Int_t, TTree**, const char*)’
rwrapper.cxx:1559: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
g++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -m64 -I/usr/local/root/include -c xpsDict.cxx
In file included from xpsDict.h:35,
                 from xpsDict.cxx:17:
TStat.h:332: warning: unused parameter ‘x’
TStat.h:333: warning: unused parameter ‘x’
TStat.h:334: warning: unused parameter ‘x’
TStat.h:335: warning: unused parameter ‘x’
In file included from xpsDict.h:37,
                 from xpsDict.cxx:17:
/usr/local/root/include/TObject.h:127: warning: ‘virtual const Option_t* TObject::GetOption() const’ was hidden
XPSBase.h:208: warning:   by ‘virtual const Option_t* XTreeInfo::GetOption()’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:17:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:42,
                 from xpsDict.cxx:17:
XPSData.h:700: warning: unused parameter ‘min’
XPSData.h:700: warning: unused parameter ‘max’
XPSData.h:700: warning: unused parameter ‘var2sort’
XPSData.h:700: warning: unused parameter ‘down’
In file included from xpsDict.h:44,
                 from xpsDict.cxx:17:
XPSHybridizer.h:178: warning: unused parameter ‘n’
XPSHybridizer.h:178: warning: unused parameter ‘x’
XPSHybridizer.h:178: warning: unused parameter ‘y’
XPSHybridizer.h:178: warning: unused parameter ‘z’
XPSHybridizer.h:178: warning: unused parameter ‘dx’
XPSHybridizer.h:178: warning: unused parameter ‘dy’
XPSHybridizer.h:178: warning: unused parameter ‘idx’
XPSHybridizer.h:178: warning: unused parameter ‘nsub’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:438: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:178: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
In file included from xpsDict.h:45,
                 from xpsDict.cxx:17:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:17:
XPSPreProcessing.h:324: warning: ‘virtual Int_t XPreProcesSet::QualityControl(Int_t, TTree**, Int_t&, TTree**)’ was hidden
XPSPreProcessing.h:395: warning:   by ‘virtual Int_t XGCProcesSet::QualityControl(Int_t, TTree**, Int_t, TTree**, const char*)’
In file included from xpsDict.h:49,
                 from xpsDict.cxx:17:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:437: warning:   by ‘XAlgorithm::Calculate’
g++ -dynamiclib -single_module -undefined dynamic_lookup -install_name /private/tmp/RtmpCpcozB/R.INSTALL4aa97174b1f4/xps/src/xps.so -O2 -m64 TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/root/lib -lGui -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lpthread -Wl,-rpath,/usr/local/root/lib -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.so
installing to /Users/biocbuild/bbs-3.2-bioc/meat/xps.buildbin-libdir/xps/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (xps)


>>>>>>> 
>>>>>>> FIXING LINKS FOR xps.buildbin-libdir/xps/libs//xps.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "xps.buildbin-libdir/xps/libs//xps.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "xps.buildbin-libdir/xps/libs//xps.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "xps.buildbin-libdir/xps/libs//xps.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "xps.buildbin-libdir/xps/libs//xps.so"