Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for MinimumDistance on windows1.bioconductor.org

This page was generated on 2015-10-27 17:29:57 -0400 (Tue, 27 Oct 2015).

Package 647/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MinimumDistance 1.14.0
Robert B Scharpf
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/MinimumDistance
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MinimumDistance
Version: 1.14.0
Command: rm -rf MinimumDistance.buildbin-libdir MinimumDistance.Rcheck && mkdir MinimumDistance.buildbin-libdir MinimumDistance.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MinimumDistance.buildbin-libdir MinimumDistance_1.14.0.tar.gz >MinimumDistance.Rcheck\00install.out 2>&1 && cp MinimumDistance.Rcheck\00install.out MinimumDistance-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MinimumDistance.buildbin-libdir --install="check:MinimumDistance-install.out" --force-multiarch --no-vignettes --timings MinimumDistance_1.14.0.tar.gz
StartedAt: 2015-10-27 03:38:03 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 03:44:51 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 407.6 seconds
RetCode: 0
Status:  OK  
CheckDir: MinimumDistance.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MinimumDistance.buildbin-libdir MinimumDistance.Rcheck && mkdir MinimumDistance.buildbin-libdir MinimumDistance.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MinimumDistance.buildbin-libdir MinimumDistance_1.14.0.tar.gz >MinimumDistance.Rcheck\00install.out 2>&1 && cp MinimumDistance.Rcheck\00install.out MinimumDistance-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MinimumDistance.buildbin-libdir --install="check:MinimumDistance-install.out" --force-multiarch --no-vignettes --timings MinimumDistance_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/MinimumDistance.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MinimumDistance/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MinimumDistance' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MinimumDistance' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calculateMindist,list : .local: no visible binding for global variable
  'elt'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [17s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
pedigreeGrid 5.69   0.06    5.76
** running examples for arch 'x64' ... [19s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
pedigreeGrid 5.08   0.02    5.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'doRUnit.R' [64s]
 [65s] OK
** running tests for arch 'x64' ...
  Running 'doRUnit.R' [62s]
 [63s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/MinimumDistance.Rcheck/00check.log'
for details.


MinimumDistance.Rcheck/00install.out:


install for i386

* installing *source* package 'MinimumDistance' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'allNames' in package 'MinimumDistance'
Creating a generic function for 'colMads' from package 'matrixStats' in package 'MinimumDistance'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MinimumDistance' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MinimumDistance' as MinimumDistance_1.14.0.zip
* DONE (MinimumDistance)

MinimumDistance.Rcheck/examples_i386/MinimumDistance-Ex.timings:

nameusersystemelapsed
DNAcopyParam0.020.000.01
FilterParamMD2.340.022.36
MAP20.050.010.07
MDRanges-class0.030.000.03
MinDistGRanges-class0.060.050.11
MinDistGRanges0.050.000.04
ParentOffspring-class000
ParentOffspringList-class000
Pedigree0.010.000.02
TrioSet1.770.031.89
acf20.010.000.02
md_exp000
pedigreeGrid5.690.065.76
pedigreeViewports000

MinimumDistance.Rcheck/examples_x64/MinimumDistance-Ex.timings:

nameusersystemelapsed
DNAcopyParam0.010.000.02
FilterParamMD2.380.042.42
MAP20.060.000.06
MDRanges-class0.020.000.02
MinDistGRanges-class0.120.000.12
MinDistGRanges0.030.000.03
ParentOffspring-class000
ParentOffspringList-class000
Pedigree0.020.000.02
TrioSet2.370.002.37
acf20.020.000.02
md_exp000
pedigreeGrid5.080.025.11
pedigreeViewports000