Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for idiogram on windows1.bioconductor.org

This page was generated on 2015-10-27 17:27:55 -0400 (Tue, 27 Oct 2015).

Package 518/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
idiogram 1.46.0
Karl J. Dykema
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/idiogram
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: idiogram
Version: 1.46.0
Command: rm -rf idiogram.buildbin-libdir idiogram.Rcheck && mkdir idiogram.buildbin-libdir idiogram.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=idiogram.buildbin-libdir idiogram_1.46.0.tar.gz >idiogram.Rcheck\00install.out 2>&1 && cp idiogram.Rcheck\00install.out idiogram-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=idiogram.buildbin-libdir --install="check:idiogram-install.out" --force-multiarch --no-vignettes --timings idiogram_1.46.0.tar.gz
StartedAt: 2015-10-27 02:49:52 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 02:51:41 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 108.7 seconds
RetCode: 0
Status:  OK  
CheckDir: idiogram.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf idiogram.buildbin-libdir idiogram.Rcheck && mkdir idiogram.buildbin-libdir idiogram.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=idiogram.buildbin-libdir idiogram_1.46.0.tar.gz >idiogram.Rcheck\00install.out 2>&1 && cp idiogram.Rcheck\00install.out idiogram-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=idiogram.buildbin-libdir --install="check:idiogram-install.out" --force-multiarch --no-vignettes --timings idiogram_1.46.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/idiogram.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'idiogram/DESCRIPTION' ... OK
* this is package 'idiogram' version '1.46.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'idiogram' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'plotrix'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
idiogram: no visible global function definition for 'draw.circle'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/idiogram.Rcheck/00check.log'
for details.


idiogram.Rcheck/00install.out:


install for i386

* installing *source* package 'idiogram' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'idiogram' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'idiogram' as idiogram_1.46.0.zip
* DONE (idiogram)

idiogram.Rcheck/examples_i386/idiogram-Ex.timings:

nameusersystemelapsed
Hs.cytoband0.000.020.01
buildChromLocation.21.140.031.17
cytoband000
idiograb0.010.000.01
idiogram1.320.011.44
idiogramExample0.120.000.12

idiogram.Rcheck/examples_x64/idiogram-Ex.timings:

nameusersystemelapsed
Hs.cytoband0.020.020.03
buildChromLocation.21.260.061.33
cytoband000
idiograb0.030.000.03
idiogram1.520.001.51
idiogramExample0.090.010.11