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BioC 3.2: BUILD report for RCy3 on moscato1

This page was generated on 2016-04-20 11:17:14 -0700 (Wed, 20 Apr 2016).

Package 855/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCy3 1.0.1
Tanja Muetze , Paul Shannon , Georgi Kolishovski
Snapshot Date: 2016-04-19 16:20:12 -0700 (Tue, 19 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RCy3
Last Changed Rev: 113783 / Revision: 116569
Last Changed Date: 2016-02-18 15:09:40 -0800 (Thu, 18 Feb 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RCy3
Version: 1.0.1
Command: chmod a+r RCy3 -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RCy3
StartedAt: 2016-04-19 23:05:57 -0700 (Tue, 19 Apr 2016)
EndedAt: 2016-04-19 23:07:33 -0700 (Tue, 19 Apr 2016)
EllapsedTime: 95.6 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r RCy3 -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RCy3
###
##############################################################################
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* checking for file 'RCy3/DESCRIPTION' ... OK
* preparing 'RCy3':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: graph
Loading required package: httr
Loading required package: RJSONIO
Loading required package: RCurl
Loading required package: bitops
Connection failed.
To troubleshoot: 1) Please ensure that you have Cytoscape open
2) that the latest version of CyREST is installed.
3) that Cytoscape uses Java 8 (not 7 or below).
To help troubleshooting, please check:
https://github.com/cytoscape/cytoscape-scripts/tree/master/system-checker

Error: processing vignette 'RCy3.Rnw' failed with diagnostics:
 chunk 1 (label = g0) 
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'displayGraph' for signature '"NULL"'
Execution halted