BioC 3.2: CHECK report for EMDomics on windows1.bioconductor.org

Package: EMDomics

Version: 2.0.0

Command: rm -rf EMDomics.buildbin-libdir EMDomics.Rcheck && mkdir EMDomics.buildbin-libdir EMDomics.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EMDomics.buildbin-libdir EMDomics_2.0.0.tar.gz >EMDomics.Rcheck\00install.out 2>&1 && cp EMDomics.Rcheck\00install.out EMDomics-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EMDomics.buildbin-libdir --install="check:EMDomics-install.out" --force-multiarch --no-vignettes --timings EMDomics_2.0.0.tar.gz

StartedAt: 2015-10-27 01:30:47 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 01:32:35 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 107.7 seconds

RetCode: 0

Status:  OK

CheckDir: EMDomics.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf EMDomics.buildbin-libdir EMDomics.Rcheck && mkdir EMDomics.buildbin-libdir EMDomics.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EMDomics.buildbin-libdir EMDomics_2.0.0.tar.gz >EMDomics.Rcheck\00install.out 2>&1 && cp EMDomics.Rcheck\00install.out EMDomics-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EMDomics.buildbin-libdir --install="check:EMDomics-install.out" --force-multiarch --no-vignettes --timings EMDomics_2.0.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/EMDomics.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EMDomics/DESCRIPTION' ... OK
* this is package 'EMDomics' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EMDomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives more than one person with maintainer role:
  Sadhika Malladi <contact@sadhikamalladi.com> [aut, cre]
  Daniel Schmolze <emd@schmolze.com> [aut, cre]
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
  'figure'
Please remove from your package.
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
plot_cvm_density 5.45   0.02    5.47
calculate_cvm    5.08   0.00    5.08
** running examples for arch 'x64' ... [41s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
calculate_cvm    6.71   0.02    6.71
plot_cvm_density 6.44   0.00    6.44
plot_cvmperms    6.19   0.00    6.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/EMDomics.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'EMDomics' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'EMDomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EMDomics' as EMDomics_2.0.0.zip
* DONE (EMDomics)

name	user	system	elapsed
calculate_cvm	5.08	0.00	5.08
calculate_cvm_gene	0	0	0
calculate_emd	3.67	0.00	3.67
calculate_emd_gene	0.02	0.00	0.02
calculate_ks	1.15	0.00	1.15
calculate_ks_gene	0.02	0.00	0.02
plot_cvm_density	5.45	0.02	5.47
plot_cvmnull	1.75	0.01	1.77
plot_cvmperms	4.98	0.00	4.98
plot_emd_density	3.41	0.03	3.44
plot_emdnull	1.41	0.00	1.41
plot_emdperms	3.48	0.00	3.48
plot_ks_density	1.02	0.02	1.03
plot_ksnull	0.46	0.02	0.49
plot_ksperms	0.93	0.00	0.92

name	user	system	elapsed
calculate_cvm	6.71	0.02	6.71
calculate_cvm_gene	0.01	0.00	0.02
calculate_emd	4.38	0.00	4.38
calculate_emd_gene	0.01	0.00	0.01
calculate_ks	1.07	0.00	1.06
calculate_ks_gene	0.01	0.00	0.02
plot_cvm_density	6.44	0.00	6.44
plot_cvmnull	2.89	0.00	2.89
plot_cvmperms	6.19	0.00	6.18
plot_emd_density	4.04	0.00	4.05
plot_emdnull	1.41	0.00	1.41
plot_emdperms	3.50	0.01	3.51
plot_ks_density	1.25	0.00	1.25
plot_ksnull	0.55	0.02	0.57
plot_ksperms	1.39	0.00	1.39