Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for DeconRNASeq on windows1.bioconductor.org

This page was generated on 2015-10-27 17:30:09 -0400 (Tue, 27 Oct 2015).

Package 257/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeconRNASeq 1.12.0
Ting Gong
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DeconRNASeq
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DeconRNASeq
Version: 1.12.0
Command: rm -rf DeconRNASeq.buildbin-libdir DeconRNASeq.Rcheck && mkdir DeconRNASeq.buildbin-libdir DeconRNASeq.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DeconRNASeq.buildbin-libdir DeconRNASeq_1.12.0.tar.gz >DeconRNASeq.Rcheck\00install.out 2>&1 && cp DeconRNASeq.Rcheck\00install.out DeconRNASeq-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DeconRNASeq.buildbin-libdir --install="check:DeconRNASeq-install.out" --force-multiarch --no-vignettes --timings DeconRNASeq_1.12.0.tar.gz
StartedAt: 2015-10-27 01:10:26 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 01:11:13 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 47.2 seconds
RetCode: 0
Status:  OK  
CheckDir: DeconRNASeq.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DeconRNASeq.buildbin-libdir DeconRNASeq.Rcheck && mkdir DeconRNASeq.buildbin-libdir DeconRNASeq.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DeconRNASeq.buildbin-libdir DeconRNASeq_1.12.0.tar.gz >DeconRNASeq.Rcheck\00install.out 2>&1 && cp DeconRNASeq.Rcheck\00install.out DeconRNASeq-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DeconRNASeq.buildbin-libdir --install="check:DeconRNASeq-install.out" --force-multiarch --no-vignettes --timings DeconRNASeq_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/DeconRNASeq.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DeconRNASeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DeconRNASeq' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DeconRNASeq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'grid' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'ggplot2' 'grid' 'pcaMethods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DeconRNASeq: no visible global function definition for 'prep'
DeconRNASeq: no visible global function definition for 'pca'
DeconRNASeq: no visible global function definition for 'R2cum'
DeconRNASeq: no visible global function definition for 'ggplot'
DeconRNASeq: no visible global function definition for 'aes'
DeconRNASeq: no visible global function definition for 'geom_point'
DeconRNASeq: no visible global function definition for 'labs'
DeconRNASeq: no visible global function definition for 'geom_abline'
DeconRNASeq: no visible global function definition for 'xlab'
DeconRNASeq: no visible global function definition for 'ylab'
multiplot: no visible global function definition for 'grid.newpage'
multiplot: no visible global function definition for 'pushViewport'
multiplot: no visible global function definition for 'viewport'
multiplot: no visible global function definition for 'grid.layout'
multiplot : vplayout: no visible global function definition for
  'viewport'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/DeconRNASeq.Rcheck/00check.log'
for details.


DeconRNASeq.Rcheck/00install.out:


install for i386

* installing *source* package 'DeconRNASeq' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DeconRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DeconRNASeq' as DeconRNASeq_1.12.0.zip
* DONE (DeconRNASeq)

DeconRNASeq.Rcheck/examples_i386/DeconRNASeq-Ex.timings:

nameusersystemelapsed
DeconRNASeq000
all.datasets0.140.010.16
array.proportions0.110.020.12
array.signatures0.050.000.05
condplot0.050.000.05
datasets0.110.000.11
fraction0.340.010.36
liver_kidney0.090.000.10
multi_tissue0.320.000.31
multiplot0.010.000.02
proportions0.100.000.09
signatures0.090.000.09
x.data0.260.040.30
x.signature0.330.010.34
x.signature.filtered0.270.020.28
x.signature.filtered.optimal0.310.000.32

DeconRNASeq.Rcheck/examples_x64/DeconRNASeq-Ex.timings:

nameusersystemelapsed
DeconRNASeq000
all.datasets0.050.000.04
array.proportions0.090.010.11
array.signatures0.050.020.07
condplot0.050.020.07
datasets0.060.010.08
fraction0.330.000.33
liver_kidney0.20.00.2
multi_tissue0.300.020.31
multiplot000
proportions0.060.020.08
signatures0.080.000.08
x.data0.290.010.32
x.signature0.240.000.23
x.signature.filtered0.250.000.25
x.signature.filtered.optimal0.230.000.23