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### Running command:
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### C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/survcomp_1.20.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch survcomp_1.20.0.tar.gz && rm survcomp_1.20.0.tar.gz
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 442k 100 442k 0 0 7584k 0 --:--:-- --:--:-- --:--:-- 86.5M
install for i386
* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'survcomp' ...
** libs
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c concordance.index.c -o concordance.index.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:106:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:107:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:216:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable 'msurv_x' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable 'ustrat_x' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable 'cnt_back' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable 'nsub' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:396:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:400:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:401:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:412:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:419:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable 'mim' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable 'jmax' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable 'max_val' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)':
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable 'found' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:596:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:597:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:604:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:646:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:654:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:657:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:661:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable 'nsamples_boot' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable 'tmp_val_max_ind' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable 'prev_sel_tmp' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable 'vec_sort' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable 'vec_local_max_sd' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_ensemble_surv.cpp:785:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:819:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:833:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:842:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:800:13: warning: unused variable 'cnt2' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:803:7: warning: unused variable 'rootdepth' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:816:7: warning: unused variable 'ind' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:30: warning: unused variable 'res_all' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:39: warning: unused variable 'res_all2' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:733:6: warning: unused variable 'vec_tmp' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:858:9: warning: 'Rres' may be used uninitialized in this function [-Wuninitialized]
foo_mrmr_ensemble_surv.cpp:820:25: warning: 'res_old' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:50:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:56:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:58:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int*, int*)':
foo_mrmr_surv.cpp:146:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp:147:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_surv.cpp:300:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:340:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -shared -s -static-libgcc -o survcomp.dll tmp.def concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/survcomp/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'survcomp' ...
** libs
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c concordance.index.c -o concordance.index.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:106:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:107:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:216:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable 'msurv_x' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable 'ustrat_x' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable 'cnt_back' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable 'nsub' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:396:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:400:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:401:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:412:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:419:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable 'mim' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable 'jmax' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable 'max_val' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)':
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable 'found' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:596:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:597:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:604:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:646:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:654:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:657:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:661:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable 'nsamples_boot' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable 'tmp_val_max_ind' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable 'prev_sel_tmp' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable 'vec_sort' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable 'vec_local_max_sd' set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_ensemble_surv.cpp:785:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:819:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:833:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:842:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:800:13: warning: unused variable 'cnt2' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:803:7: warning: unused variable 'rootdepth' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:816:7: warning: unused variable 'ind' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:30: warning: unused variable 'res_all' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:39: warning: unused variable 'res_all2' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:733:6: warning: unused variable 'vec_tmp' [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:858:9: warning: 'Rres' may be used uninitialized in this function [-Wuninitialized]
foo_mrmr_ensemble_surv.cpp:820:25: warning: 'res_old' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:50:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:56:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:58:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int*, int*)':
foo_mrmr_surv.cpp:146:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp:147:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_surv.cpp:300:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:340:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -shared -s -static-libgcc -o survcomp.dll tmp.def concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/survcomp/libs/x64
** testing if installed package can be loaded
* DONE (survcomp)
