netbiov 1.3.1
Shailesh tripathi
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/netbiov | | Last Changed Rev: 106583 / Revision: 107602 | | Last Changed Date: 2015-07-20 10:05:43 -0700 (Mon, 20 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf netbiov.buildbin-libdir netbiov.Rcheck && mkdir netbiov.buildbin-libdir netbiov.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=netbiov.buildbin-libdir netbiov_1.3.1.tar.gz >netbiov.Rcheck\00install.out 2>&1 && cp netbiov.Rcheck\00install.out netbiov-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=netbiov.buildbin-libdir --install="check:netbiov-install.out" --force-multiarch --no-vignettes --timings netbiov_1.3.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/netbiov.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'netbiov/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'netbiov' version '1.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'netbiov' can be installed ... OK
* checking installed package size ... NOTE
installed size is 18.7Mb
sub-directories of 1Mb or more:
doc 17.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following files are already in R: 'Sweave.sty'
Please remove them from your package.
* checking examples ...
** running examples for arch 'i386' ... [317s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
level.plot 119.53 0.60 120.60
plot.abstract.module 74.10 0.17 74.32
plot.modules 61.54 0.02 62.23
mst.plot 34.01 0.05 34.18
mst.plot.mod 13.01 0.05 15.32
** running examples for arch 'x64' ... [367s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
level.plot 142.17 0.51 148.05
plot.abstract.module 88.22 0.14 88.36
plot.modules 72.42 0.06 74.23
mst.plot 29.86 0.06 30.53
mst.plot.mod 14.25 0.07 14.48
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [25s]
[25s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [26s]
[26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'D:/biocbld/bbs-3.2-bioc/meat/netbiov.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'netbiov' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'netbiov' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netbiov' as netbiov_1.3.1.zip
* DONE (netbiov)