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BioC 3.2: BUILD BIN report for HilbertVisGUI on perceval

This page was generated on 2015-10-27 17:33:52 -0400 (Tue, 27 Oct 2015).

Package 495/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertVisGUI 1.28.0
Simon Anders
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/HilbertVisGUI
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: HilbertVisGUI
Version: 1.28.0
Command: rm -rf HilbertVisGUI.buildbin-libdir && mkdir HilbertVisGUI.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVisGUI_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVisGUI.buildbin-libdir
StartedAt: 2015-10-27 11:46:55 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 11:47:34 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 38.3 seconds
RetCode: 0
Status:  OK 
PackageFile: HilbertVisGUI_1.28.0.tgz
PackageFileSize: 168 KiB

Command output

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###
### Running command:
###
###   rm -rf HilbertVisGUI.buildbin-libdir && mkdir HilbertVisGUI.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVisGUI_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVisGUI.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVisGUI.buildbin-libdir HilbertVisGUI_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘HilbertVisGUI’ ...
-n Checking for pkg-config... 
/usr/bin/pkg-config
-n Checking for gtkmm-2.4... 
found: version 2.24.2
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include   `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC  -mtune=core2 -g -O2 -Wall  -c R_env_prot.c -o R_env_prot.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c R_interface.cc -o R_interface.o
R_interface.cc: In function ‘SEXPREC* R_display_hilbert(SEXPREC*)’:
R_interface.cc:510: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509: warning: unused variable ‘palette_level’
R_interface.cc: In member function ‘void MainWindowForRForBidir::set_palette_level(double)’:
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c colorizers.cc -o colorizers.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c display.cc -o display.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c ruler.cc -o ruler.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c window.cc -o window.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -L/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib -lgtkmm-2.4 -lgiomm-2.4 -lgdkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lpangomm-1.4 -lcairomm-1.0 -lglibmm-2.4 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lz -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertVisGUI)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs//HilbertVisGUI.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs//HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs//HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs//HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs//HilbertVisGUI.so"