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BioC 3.2: CHECK report for RIPSeeker on zin1

This page was generated on 2015-08-24 10:48:59 -0700 (Mon, 24 Aug 2015).

Package 859/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RIPSeeker 1.9.2
Yue Li
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RIPSeeker
Last Changed Rev: 103967 / Revision: 107696
Last Changed Date: 2015-05-19 14:48:31 -0700 (Tue, 19 May 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ ERROR ]
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  ERROR  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  ERROR  OK 

Summary

Package: RIPSeeker
Version: 1.9.2
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RIPSeeker_1.9.2.tar.gz
StartedAt: 2015-08-24 03:16:39 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 03:16:40 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:  ERROR 
CheckDir: RIPSeeker.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RIPSeeker_1.9.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/RIPSeeker.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RIPSeeker/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RIPSeeker’ version ‘1.9.2’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘ChIPpeakAnno’

Depends: includes the non-default packages:
  ‘IRanges’ ‘GenomicRanges’ ‘SummarizedExperiment’ ‘Rsamtools’
  ‘GenomicAlignments’ ‘rtracklayer’
Adding so many packages to the search path is excessive and importing
selectively is preferable.

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.2-bioc/meat/RIPSeeker.Rcheck/00check.log’
for details.