BioC 3.2: CHECK report for INSPEcT on moscato1

Package: INSPEcT

Version: 0.99.8

Command: rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_0.99.8.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_0.99.8.tar.gz

StartedAt: 2015-07-20 04:40:25 -0700 (Mon, 20 Jul 2015)

EndedAt: 2015-07-20 05:20:26 -0700 (Mon, 20 Jul 2015)

EllapsedTime: 2400.2 seconds

RetCode: None

Status:  TIMEOUT

CheckDir: INSPEcT.Rcheck

Warnings: NA

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### Running command:
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###   rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_0.99.8.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_0.99.8.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/INSPEcT.Rcheck'
* using R version 3.2.1 (2015-06-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'INSPEcT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'INSPEcT' version '0.99.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'INSPEcT' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   3.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ...

install for i386

* installing *source* package 'INSPEcT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'INSPEcT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'INSPEcT' as INSPEcT_0.99.8.zip
* DONE (INSPEcT)

name	user	system	elapsed
AIC-INSPEcT-method	0.00	0.02	0.01
Extract	0.1	0.0	0.1
chisqmodel	0.03	0.00	0.03
chisqtest	0	0	0
combine	0.14	0.00	0.14
geneClass	0.05	0.00	0.05
getModel	0.02	0.00	0.02
inHeatmap	0.04	0.00	0.04
labeledSF	0.02	0.00	0.02
logLik	0	0	0
makeGtfFromDb	1.67	0.37	39.94
makeModelRates	1.00	0.00	1.04
makeRPKMs	0	0	0