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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:immunotation.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings immunotation_1.12.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/immunotation.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘immunotation/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘immunotation’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘immunotation’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R         3.9Mb
    extdata   2.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘immunotation-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: decode_MAC
> ### Title: Decode MAC
> ### Aliases: decode_MAC
> 
> ### ** Examples
> 
> MAC <- "A*01:ATJNV"
> decode_MAC(MAC)
Error in curl::curl_fetch_memory(url, handle = h) : 
  Could not resolve host: hml.nmdp.org
Calls: decode_MAC -> fetch_decoded_MAC -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   6.     └─curl::curl_fetch_memory(url, handle = h)
  ── Error ('test_3_name_conversions.R:91:5'): decode_MAC() returns expected results ──
  Error in `curl::curl_fetch_memory(url, handle = h)`: Could not resolve host: hml.nmdp.org
  Backtrace:
      ▆
   1. ├─testthat::expect_is(decode_MAC("A*01:01"), "character") at test_3_name_conversions.R:91:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─immunotation::decode_MAC("A*01:01")
   5.   └─immunotation:::fetch_decoded_MAC(MAC)
   6.     └─curl::curl_fetch_memory(url, handle = h)
  
  [ FAIL 4 | WARN 1 | SKIP 0 | PASS 136 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/immunotation.Rcheck/00check.log’
for details.

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL immunotation
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘immunotation’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (immunotation)

R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(immunotation)
> 
> test_check("immunotation")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 136 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_3_name_conversions.R:68:5'): encode_MAC() returns error when arguments not adequate ──
Error in `curl::curl_fetch_memory("https://hml.nmdp.org/mac/api/encode", 
    handle = handle)`: Could not resolve host: hml.nmdp.org
Backtrace:
    ▆
 1. ├─testthat::expect_equal(encode_MAC(""), "glstring is empty") at test_3_name_conversions.R:68:5
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─immunotation::encode_MAC("")
 5.   └─immunotation:::fetch_encoded_MAC(handle)
 6.     └─curl::curl_fetch_memory(...)
── Error ('test_3_name_conversions.R:77:5'): encode_MAC() returns expected results ──
Error in `curl::curl_fetch_memory("https://hml.nmdp.org/mac/api/encode", 
    handle = handle)`: Could not resolve host: hml.nmdp.org
Backtrace:
    ▆
 1. ├─testthat::expect_equal(encode_MAC("A*01:01"), "A*01:01") at test_3_name_conversions.R:77:5
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─immunotation::encode_MAC("A*01:01")
 5.   └─immunotation:::fetch_encoded_MAC(handle)
 6.     └─curl::curl_fetch_memory(...)
── Error ('test_3_name_conversions.R:83:5'): decode_MAC() returns error when arguments not adequate ──
Error in `curl::curl_fetch_memory(url, handle = h)`: Could not resolve host: hml.nmdp.org
Backtrace:
    ▆
 1. ├─testthat::expect_equal(decode_MAC(""), "Empty allele designation") at test_3_name_conversions.R:83:5
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─immunotation::decode_MAC("")
 5.   └─immunotation:::fetch_decoded_MAC(MAC)
 6.     └─curl::curl_fetch_memory(url, handle = h)
── Error ('test_3_name_conversions.R:91:5'): decode_MAC() returns expected results ──
Error in `curl::curl_fetch_memory(url, handle = h)`: Could not resolve host: hml.nmdp.org
Backtrace:
    ▆
 1. ├─testthat::expect_is(decode_MAC("A*01:01"), "character") at test_3_name_conversions.R:91:5
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─immunotation::decode_MAC("A*01:01")
 5.   └─immunotation:::fetch_decoded_MAC(MAC)
 6.     └─curl::curl_fetch_memory(url, handle = h)

[ FAIL 4 | WARN 1 | SKIP 0 | PASS 136 ]
Error: Test failures
Execution halted