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This page was generated on 2024-03-04 11:40:08 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2201/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantExperiment 1.17.0  (landing page)
Qian Liu
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/VariantExperiment
git_branch: devel
git_last_commit: 55d5620
git_last_commit_date: 2023-10-24 11:15:51 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for VariantExperiment on merida1


To the developers/maintainers of the VariantExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VariantExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: VariantExperiment
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantExperiment
StartedAt: 2024-03-01 23:28:20 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 23:29:33 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 73.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantExperiment
###
##############################################################################
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* checking for file ‘VariantExperiment/DESCRIPTION’ ... OK
* preparing ‘VariantExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VariantExperiment-class.Rmd’ using rmarkdown

Quitting from lines 115-120 [GDSArray] (VariantExperiment-class.Rmd)
Error: processing vignette 'VariantExperiment-class.Rmd' failed with diagnostics:
The GDS file is closed or uninitialized.
--- failed re-building ‘VariantExperiment-class.Rmd’

SUMMARY: processing the following file failed:
  ‘VariantExperiment-class.Rmd’

Error: Vignette re-building failed.
Execution halted