Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:20 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for tximport on xps15


To the developers/maintainers of the tximport package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 86/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tximport 1.29.0  (landing page)
Michael Love
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/tximport
git_branch: devel
git_last_commit: 77c3ed8
git_last_commit_date: 2023-04-25 10:44:05 -0400 (Tue, 25 Apr 2023)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: tximport
Version: 1.29.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tximport
StartedAt: 2023-06-01 12:50:38 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:51:20 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 42.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tximport
###
##############################################################################
##############################################################################


* checking for file ‘tximport/DESCRIPTION’ ... OK
* preparing ‘tximport’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tximport.Rmd’ using rmarkdown

Quitting from lines 266-270 [unnamed-chunk-13] (tximport.Rmd)
Error: processing vignette 'tximport.Rmd' failed with diagnostics:
reading kallisto results from hdf5 files requires Bioconductor package `rhdf5`
--- failed re-building ‘tximport.Rmd’

SUMMARY: processing the following file failed:
  ‘tximport.Rmd’

Error: Vignette re-building failed.
Execution halted