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This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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INSTALL results for limma on xps15


To the developers/maintainers of the limma package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 53/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limma 3.57.1  (landing page)
Gordon Smyth
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/limma
git_branch: devel
git_last_commit: ead2f37
git_last_commit_date: 2023-05-06 01:05:42 -0400 (Sat, 06 May 2023)
xps15Linux (Ubuntu 23.04) / x86_64  OK    OK    OK  

Summary

Package: limma
Version: 3.57.1
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL limma
StartedAt: 2023-06-01 12:18:58 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:19:14 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 16.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL limma
###
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* installing to library ‘/home/hpages/bbs-3.18-bioc-testing/Rlibs’
* installing *source* package ‘limma’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 12.2.0-17ubuntu1) 12.2.0’
gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c normexp.c -o normexp.o
gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c weighted_lowess.c -o weighted_lowess.o
gcc -shared -L/usr/local/lib -o limma.so init.o normexp.o weighted_lowess.o
installing to /home/hpages/bbs-3.18-bioc-testing/Rlibs/00LOCK-limma/00new/limma/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (limma)