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This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 655 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 61/118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
GOSemSim 2.28.1 (landing page) Guangchuang Yu
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | ||||||||
To the developers/maintainers of the GOSemSim package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GOSemSim |
Version: 2.28.1 |
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL GOSemSim |
StartedAt: 2024-03-08 15:31:23 -0500 (Fri, 08 Mar 2024) |
EndedAt: 2024-03-08 15:31:34 -0500 (Fri, 08 Mar 2024) |
EllapsedTime: 10.4 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL GOSemSim ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’ * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function ‘Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)’: ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 82 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 88 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:118:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 118 | for (std::size_t i=0; i < anc_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:131:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 131 | for ( std::size_t i = 0; i < id1_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 138 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:165:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 165 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o GOSemSim.so ICmethod.o RcppExports.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-GOSemSim/00new/GOSemSim/libs ** R Error in parse(outFile) : /home/hpages/bbs-3.18-bioc-R41/meat/GOSemSim/R/buildGOmap.R:33:35: unexpected input 32: return(d) 33: }) |> do.call('rbind', args = _ ^ ERROR: unable to collate and parse R files for package ‘GOSemSim’ * removing ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library/GOSemSim’