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This page was generated on 2022-07-11 11:06:41 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BridgeDbR on kjohnson


To the developers/maintainers of the BridgeDbR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BridgeDbR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 224/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BridgeDbR 2.7.4  (landing page)
Egon Willighagen
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/BridgeDbR
git_branch: master
git_last_commit: e830f1c
git_last_commit_date: 2022-07-08 08:29:01 -0400 (Fri, 08 Jul 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: BridgeDbR
Version: 2.7.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BridgeDbR
StartedAt: 2022-07-11 04:18:30 -0400 (Mon, 11 Jul 2022)
EndedAt: 2022-07-11 04:18:43 -0400 (Mon, 11 Jul 2022)
EllapsedTime: 13.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BridgeDbR
###
##############################################################################
##############################################################################


* checking for file ‘BridgeDbR/DESCRIPTION’ ... OK
* preparing ‘BridgeDbR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘BridgeDbR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
The operation couldn’t be completed. Unable to locate a Java Runtime.
Please visit http://www.java.com for information on installing Java.

Error: package or namespace load failed for ‘rJava’:
 .onLoad failed in loadNamespace() for 'rJava', details:
  call: fun(libname, pkgname)
  error: JVM could not be found
In addition: Warning messages:
1: In fun(libname, pkgname) : JAVA_HOME is set incorrectly! Ingoring.
2: In system("/usr/libexec/java_home", intern = TRUE) :
  running command '/usr/libexec/java_home' had status 1
3: In fun(libname, pkgname) :
  Cannot find JVM library 'NA/lib/server/libjvm.dylib'
Install Java and/or check JAVA_HOME (if in doubt, do NOT set it, it will be detected)
Execution halted
ERROR: lazy loading failed for package ‘BridgeDbR’
* removing ‘/private/tmp/RtmpkpXVY5/Rinst10d9e7ed14e80/BridgeDbR’
      -----------------------------------
ERROR: package installation failed