Cole Trapnell
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/monocle |
| git_branch: master |
| git_last_commit: 338ec97 |
| git_last_commit_date: 2022-03-10 16:06:18 -0400 (Thu, 10 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:04 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the monocle package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/monocle.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1200/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| monocle 2.23.2 (landing page) Cole Trapnell
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: monocle |
| Version: 2.23.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL monocle |
| StartedAt: 2022-03-17 15:50:22 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:51:57 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 95.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL monocle
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'monocle' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c clustering.cpp -o clustering.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-monocle/00new/monocle/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'monocle'
finding HTML links ... done
BEAM html
CellDataSet-methods html
CellDataSet html
CellType html
CellTypeHierarchy html
addCellType html
branchTest html
buildBranchCellDataSet html
calABCs html
calILRs html
calibrate_per_cell_total_proposal html
cellPairwiseDistances-set html
cellPairwiseDistances html
clusterCells html
clusterGenes html
compareModels html
detectBifurcationPoint html
detectGenes html
diff_test_helper html
differentialGeneTest html
dispersionTable html
estimateDispersionsForCellDataSet html
estimateSizeFactorsForMatrix html
estimate_t html
exportCDS html
extract_good_branched_ordering html
fitModel html
fit_model_helper html
genSmoothCurveResiduals html
genSmoothCurves html
get_classic_muscle_markers html
importCDS html
load_HSMM html
load_HSMM_markers html
load_lung html
markerDiffTable html
mcesApply html
minSpanningTree-set html
minSpanningTree html
newCellDataSet html
newCellTypeHierarchy html
orderCells html
order_p_node html
package-deprecated html
plot_cell_clusters html
plot_cell_trajectory html
plot_clusters html
plot_coexpression_matrix html
plot_complex_cell_trajectory html
plot_genes_branched_heatmap html
plot_genes_branched_pseudotime html
plot_genes_in_pseudotime html
plot_genes_jitter html
plot_genes_positive_cells html
plot_genes_violin html
plot_multiple_branches_heatmap html
plot_multiple_branches_pseudotime html
plot_ordering_genes html
plot_pc_variance_explained html
plot_pseudotime_heatmap html
plot_rho_delta html
pq_helper html
reduceDimension html
reducedDimA-set html
reducedDimA html
reducedDimK-set html
reducedDimK html
reducedDimS-set html
reducedDimS html
reducedDimW-set html
reducedDimW html
relative2abs html
residualMatrix html
responseMatrix html
selectTopMarkers html
setOrderingFilter html
spike_df html
vstExprs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monocle)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'macat' is missing or broken
done