| Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:09 -0400 (Wed, 15 Apr 2020).
| These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
| TO THE DEVELOPERS/MAINTAINERS OF THE zlibbioc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 89/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| zlibbioc 1.33.1 Bioconductor Package Maintainer
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK |
| Package: zlibbioc |
| Version: 1.33.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/zlibbioc_1.33.1.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.33.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL zlibbioc_1.33.1.zip && rm zlibbioc_1.33.1.tar.gz zlibbioc_1.33.1.zip |
| StartedAt: 2020-04-14 17:30:06 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 17:30:30 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 24.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/zlibbioc_1.33.1.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.33.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL zlibbioc_1.33.1.zip && rm zlibbioc_1.33.1.tar.gz zlibbioc_1.33.1.zip
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install for i386
* installing *source* package 'zlibbioc' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
make -C zlib-1.2.5 -f"C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/i386/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmp0EQlGD/R.INSTALLb6831792bb6/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/i386/Makeconf:216: warning: ignoring old recipe for target '.c.o'
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
/mingw32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
/mingw32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
/mingw32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
/mingw32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
/mingw32/bin/strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmp0EQlGD/R.INSTALLb6831792bb6/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
"C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include"
/mingw32/bin/gcc -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o
/mingw32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'zlibbioc'
finding HTML links ... done
pkgconfig html
zlibbioc-package html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'zlibbioc' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -f"C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/x64/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpwDgLFr/R.INSTALL45c36017ce8/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/x64/Makeconf:216: warning: ignoring old recipe for target '.c.o'
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
/mingw64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
/mingw64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
/mingw64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
/mingw64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
/mingw64/bin/strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpwDgLFr/R.INSTALL45c36017ce8/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
"C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
/mingw64/bin/gcc -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o
/mingw64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.33.1.zip
* DONE (zlibbioc)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'zlibbioc' successfully unpacked and MD5 sums checked