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INSTALL report for genefilter on malbec2

This page was generated on 2020-01-24 03:57:02 -0500 (Fri, 24 Jan 2020).

Package 20/41HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.69.0
Bioconductor Package Maintainer
Snapshot Date: 2020-01-24 01:50:48 -0500 (Fri, 24 Jan 2020)
URL: https://git.bioconductor.org/packages/genefilter
Branch: master
Last Commit: fac34a5
Last Changed Date: 2019-10-29 13:34:29 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64 [ OK ] OK  WARNINGS 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 

Summary

Package: genefilter
Version: 1.69.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL genefilter
StartedAt: 2020-01-24 02:09:42 -0500 (Fri, 24 Jan 2020)
EndedAt: 2020-01-24 02:10:06 -0500 (Fri, 24 Jan 2020)
EllapsedTime: 24.0 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL genefilter
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc-testing/Rlibs’
* installing *source* package ‘genefilter’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c half_range_mode.cpp -o half_range_mode.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c nd.c -o nd.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c pAUC.c -o pAUC.o
pAUC.c: In function ‘pAUC’:
pAUC.c:140:13: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
     if(rows != INTEGER(dimSens)[1] | columns != INTEGER(dimSens)[0])
        ~~~~~^~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c rowPAUCs.c -o rowPAUCs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c rowttests.c -o rowttests.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c ttest.f -o ttest.o
ttest.f:47:12:

          dm=dm1-dm2
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
ttest.f:50:12:

          dm=dm1/dm2
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
ttest.f:59:13:

          tst=(dm1-dm2)/sqrt((1.d0/ng1+1.d0/ng2)*(dss1+dss2)/(ng1+ng2-2))
             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
ttest.f:62:10:

       tst=(dm1-dm2)/sqrt(dss1/((ng1-1)*ng1)+dss2/((ng2-1)*ng2))
          1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/00LOCK-genefilter/00new/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genefilter)