| Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:11 -0400 (Wed, 15 Apr 2020).
| These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
| TO THE DEVELOPERS/MAINTAINERS OF THE Rhdf5lib PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 69/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| Rhdf5lib 1.9.2 Mike Smith
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK |
| Package: Rhdf5lib |
| Version: 1.9.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/Rhdf5lib_1.9.2.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.9.2.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL Rhdf5lib_1.9.2.zip && rm Rhdf5lib_1.9.2.tar.gz Rhdf5lib_1.9.2.zip |
| StartedAt: 2020-04-14 17:38:20 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 17:39:00 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 40.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/Rhdf5lib_1.9.2.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.9.2.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL Rhdf5lib_1.9.2.zip && rm Rhdf5lib_1.9.2.tar.gz Rhdf5lib_1.9.2.zip
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install for i386
* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.5.tar.gz ...
** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "winlib-8.3.0/i386/libhdf5.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib-8.3.0/i386/libhdf5_cpp.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib-8.3.0/i386/libhdf5_hl.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl.a"
cp "winlib-8.3.0/i386/libhdf5_hl_cpp.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/i386/libszip.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
/mingw32/bin/gcc -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o
/mingw32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//i386/libhdf5.a winlib-8.3.0//i386/libszip.a -lpsapi -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rhdf5lib'
finding HTML links ... done
Rhdf5lib html
getHdf5Version html
pkgconfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.10.5.tar.gz ...
** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp "winlib-8.3.0/x64/libhdf5.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib-8.3.0/x64/libhdf5_cpp.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib-8.3.0/x64/libhdf5_hl.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl.a"
cp "winlib-8.3.0/x64/libhdf5_hl_cpp.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/x64/libszip.a" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
/mingw64/bin/gcc -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o
/mingw64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//x64/libhdf5.a winlib-8.3.0//x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_1.9.2.zip
* DONE (Rhdf5lib)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'Rhdf5lib' successfully unpacked and MD5 sums checked