Nan Xiao
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/sevenbridges |
| Branch: RELEASE_3_10 |
| Last Commit: fe93e09 |
| Last Changed Date: 2020-03-26 16:04:53 -0400 (Thu, 26 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:25:24 -0400 (Wed, 15 Apr 2020).
| Package 1574/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sevenbridges 1.16.1 Nan Xiao
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sevenbridges |
| Version: 1.16.1 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings sevenbridges_1.16.1.tar.gz |
| StartedAt: 2020-04-15 06:34:18 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:40:52 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 393.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sevenbridges.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings sevenbridges_1.16.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/sevenbridges.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sevenbridges/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sevenbridges' version '1.16.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sevenbridges' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Flow 40.27 0.06 40.36
Tool-class 12.97 0.00 25.63
link_what 10.63 0.00 10.63
link 9.57 0.00 9.58
convert_app 6.13 0.01 6.14
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Flow 62.86 0.03 62.92
Tool-class 15.93 0.02 15.95
link 8.53 0.00 8.54
link_what 8.19 0.00 8.18
convert_app 5.87 0.00 5.88
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
sevenbridges.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/sevenbridges_1.16.1.tar.gz && rm -rf sevenbridges.buildbin-libdir && mkdir sevenbridges.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sevenbridges.buildbin-libdir sevenbridges_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL sevenbridges_1.16.1.zip && rm sevenbridges_1.16.1.tar.gz sevenbridges_1.16.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1034k 100 1034k 0 0 19.2M 0 --:--:-- --:--:-- --:--:-- 20.6M
install for i386
* installing *source* package 'sevenbridges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sevenbridges'
finding HTML links ... done
App-class html
Auth-class html
Binding html
CCBList html
CWL html
CommandInputParameter-class html
CommandInputSchema-class html
CommandLineBinding-class html
CommandLineTool html
CommandOutputBinding-class html
CommandOutputParameter-class html
CommandOutputSchema-class html
DSCList html
Enum html
Expression-class html
ExpressionTool-class html
FS-class html
File-class html
Files-class html
Flow html
Handler-class html
Item-class html
Metadata html
Parameter html
Process html
ProcessRequirement html
Schema html
TaskHook html
Tool-class html
Workflow html
WorkflowStep html
addIdNum html
api html
as-methods html
batch html
cli_list_projects html
cli_list_tags html
cli_upload html
convert_app html
cwl-utils html
delete-methods html
download-methods html
get_token html
get_uploader html
input_output_matrix html
link html
link_what html
project_details html
project_members html
requirements html
response-methods html
sbg_get_env html
sbg_set_env html
setListClass html
set_test_env html
sevenbridges-package html
shorthand-cwl html
status_check html
tag-methods html
test_tool_bunny html
test_tool_cwlrun html
test_tool_rabix html
upload_complete_all html
upload_complete_part html
upload_delete html
upload_info html
upload_info_part html
upload_init html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sevenbridges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sevenbridges' as sevenbridges_1.16.1.zip
* DONE (sevenbridges)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'sevenbridges' successfully unpacked and MD5 sums checked
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sevenbridges.Rcheck/tests_i386/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
== testthat results ===========================================================
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
3.12 0.25 3.36
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sevenbridges.Rcheck/tests_x64/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
== testthat results ===========================================================
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
3.14 0.18 3.32
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sevenbridges.Rcheck/examples_i386/sevenbridges-Ex.timings
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sevenbridges.Rcheck/examples_x64/sevenbridges-Ex.timings
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