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BioC 3.1: BUILD BIN report for spliceSites on petty

This page was generated on 2015-08-17 09:04:51 -0700 (Mon, 17 Aug 2015).

Package 938/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spliceSites 1.6.0
Wolfgang Kaisers
Snapshot Date: 2015-08-16 17:20:12 -0700 (Sun, 16 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/spliceSites
Last Changed Rev: 102591 / Revision: 107493
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: spliceSites
Version: 1.6.0
Command: rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceSites_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceSites.buildbin-libdir
StartedAt: 2015-08-17 03:19:59 -0700 (Mon, 17 Aug 2015)
EndedAt: 2015-08-17 03:20:21 -0700 (Mon, 17 Aug 2015)
EllapsedTime: 21.9 seconds
RetCode: 0
Status:  OK 
PackageFile: spliceSites_1.6.0.tgz
PackageFileSize: 3.183 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceSites_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceSites.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=spliceSites.buildbin-libdir spliceSites_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘spliceSites’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c spliceSites.c -o spliceSites.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o spliceSites.so spliceSites.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/spliceSites.buildbin-libdir/spliceSites/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (spliceSites)


>>>>>>> 
>>>>>>> FIXING LINKS FOR spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"