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Package 80/516HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.18.0
Joseph Barry
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/cellHTS2
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.18.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.18.0.tar.gz
StartedAt: 2012-01-09 01:50:00 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 01:55:12 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 312.5 seconds
RetCode: 0
Status:  OK  
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/cellHTS2.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data     1.2Mb
    doc      1.5Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  KcViab.rda            636Kb    331Kb       xz
  KcViabSmall.rda        41Kb     22Kb       xz
  bdgpbiomart.rda       462Kb    269Kb       xz
  dualCh.rda             43Kb     23Kb       xz
  oldKcViabSmall.rda     39Kb     22Kb       xz
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Creating a generic function for 'lines' from package 'graphics' in package 'cellHTS2'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'cellhts2.Rnw' 
   'cellhts2Complete.Rnw' 
   'twoChannels.Rnw' 
   'twoWay.Rnw' 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore1.920.031.95
ROC-class0.330.000.33
ROC1.110.001.11
annotate0.840.000.84
bdgpbiomart0.410.000.41
buildCellHTS20.230.000.23
cellHTS-class1.10.01.1
configurationAsScreenPlot0.720.000.72
configure0.590.020.61
convertOldCellHTS1.050.001.04
convertWellCoordinates000
data-KcViab0.120.000.13
data-KcViabSmall000
data-dualCh000
data-oldKcViabSmall0.020.000.02
getDynamicRange0.560.000.56
getEnVisionRawData0.030.020.05
getMeasureRepAgreement0.50.00.5
getTopTable1.140.001.14
getZfactor0.360.000.36
imageScreen1.140.001.14
normalizePlates1.280.011.30
oneRowPerId000
plotSpatialEffects1.030.021.04
readHTAnalystData0.900.000.89
readPlateList0.650.000.66
rsa0.740.000.73
scoreReplicates0.820.000.83
scores2calls0.890.000.89
setSettings0.020.000.02
spatialNormalization1.190.001.23
summarizeChannels1.440.001.44
summarizeReplicates0.820.000.83
templateDescriptionFile000
updateCellHTS0.020.000.01
write.tabdel0.030.000.03
writeReport0.020.000.02
writeTab0.010.000.02