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Package 467/472HostnameOS / ArchBUILDCHECKBUILD BIN
XDE 1.99.2
Robert Scharpf
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/XDE
Last Changed Rev: 55617 / Revision: 56351
Last Changed Date: 2011-05-15 19:28:21 -0700 (Sun, 15 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386 [ ERROR ] skipped  skipped 

Summary

Package: XDE
Version: 1.99.2
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data XDE
StartedAt: 2011-06-21 23:23:42 -0700 (Tue, 21 Jun 2011)
EndedAt: 2011-06-21 23:24:00 -0700 (Tue, 21 Jun 2011)
EllapsedTime: 18.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘XDE/DESCRIPTION’ ... OK
* preparing ‘XDE’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package ‘XDE’ ...
** libs
** arch - i386
/usr/bin/g++  -I. -O3 -c mainTest_v2.cpp
touch Cholesky.h
/usr/bin/g++  -I. -O3 -c Random.cpp
/usr/bin/g++  -I. -O3 -c Cholesky.cpp
/usr/bin/g++  -I. -O3 -c Matrix.cpp
/usr/bin/g++  -I. -O3 -o ./xdeTest mainTest_v2.cpp \
			Random.o Cholesky.o Matrix.o -lm
R CMD SHLIB -o Rinterface_v2.so Rinterface_v2.cpp
WARNING: ignoring environment value of R_HOME
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:6,
                 from Rinterface_v2.cpp:3:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Versions/2.13/Resources/include/R.h:38,
                 from Rinterface_v2.cpp:1:
/Library/Frameworks/R.framework/Versions/2.13/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rinterface_v2.so Rinterface_v2.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmpiTH321/Rinst68a69a15/XDE/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  ‘browseVignettes()’. To cite Bioconductor, see
  ‘citation("Biobase")’ and for packages ‘citation("pkgname")’.

Creating a generic function for "pairs" from package "graphics" in package “XDE”
Creating a generic function for "lapply" from package "base" in package “XDE”
Creating a generic function for "nrow" from package "base" in package “XDE”
Creating a generic function for "plot" from package "graphics" in package “XDE”
** help
*** installing help indices
** building package indices ...
Error in library.dynam(lib, package, package.lib) : 
  shared object ‘XDE’ not found
ERROR: installing package indices failed
* removing ‘/private/tmp/RtmpiTH321/Rinst68a69a15/XDE’
      -----------------------------------
ERROR: package installation failed