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Package 372/472HostnameOS / ArchBUILDCHECKBUILD BIN
RCASPAR 0.99.2
Douaa Mugahid , Lars Kaderali
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCASPAR
Last Changed Rev: 56052 / Revision: 56351
Last Changed Date: 2011-06-08 10:12:15 -0700 (Wed, 08 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: RCASPAR
Version: 0.99.2
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RCASPAR_0.99.2.tar.gz
StartedAt: 2011-06-22 04:53:04 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 04:53:33 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 28.9 seconds
RetCode: 0
Status:  OK 
CheckDir: RCASPAR.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/RCASPAR.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCASPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCASPAR’ version ‘0.99.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RCASPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RCASPAR.Rcheck/00install.out:

* installing *source* package ‘RCASPAR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RCASPAR.Rnw’ 
** testing if installed package can be loaded

* DONE (RCASPAR)

RCASPAR.Rcheck/RCASPAR-Ex.timings:

nameusersystemelapsed
Bergamaschi0.0250.0030.028
RCASPAR-package1.1890.0241.236
STpredictor_BLH0.1780.0050.190
STpredictor_xvBLH1.6370.0201.675
deriv_weight_estimator_BLH0.0060.0010.008
deriv_weight_estimator_BLH_noprior0.0060.0010.007
kmplt0.0050.0010.005
kmplt_svrl0.0160.0000.016
logrnk0.0070.0000.007
pltgamma0.0020.0000.002
pltprior0.0020.0000.002
simpson0.0010.0000.001
survData0.0030.0010.004
survivAURC0.3550.0040.362
survivROC0.1020.0020.105
trapezoid0.0010.0000.001
weight_estimator_BLH000
weight_estimator_BLH_noprior0.0070.0010.009
weights_BLH0.0150.0010.016
weights_xvBLH0.1230.0020.126