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Package 336/463HostnameOS / ArchBUILDCHECKBUILD BIN
phenoDist 1.1.0
Xian Zhang
Snapshot Date: 2011-06-02 07:21:07 -0700 (Thu, 02 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/phenoDist
Last Changed Rev: 54802 / Revision: 55954
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: phenoDist
Version: 1.1.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch phenoDist_1.1.0.tar.gz
StartedAt: 2011-06-02 15:16:44 -0700 (Thu, 02 Jun 2011)
EndedAt: 2011-06-02 15:23:14 -0700 (Thu, 02 Jun 2011)
EllapsedTime: 389.9 seconds
RetCode: 0
Status:  OK  
CheckDir: phenoDist.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/phenoDist.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'phenoDist/DESCRIPTION' ... OK
* this is package 'phenoDist' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'phenoDist' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

phenoDist.Rcheck/00install.out:

* installing *source* package 'phenoDist' ...
** R
** inst
** preparing package for lazy loading
Loading required package: EBImage
Loading required package: abind
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:EBImage':

    channel, combine

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
Loading required package: class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'phenoDist.Rnw' 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (phenoDist)

phenoDist.Rcheck/phenoDist-Ex.timings:

nameusersystemelapsed
PDMByFactorAnalysis 3.99 0.0155.67
PDMByKS 11.58 0.27136.20
PDMBySvmAccuracy14.17 0.0614.29
PDMBySvmWeightVector21.42 0.0321.53
PDMByWellAvg2.420.034.56
clusterDist0.530.000.53
ctlSeparatn000
distToNeg12.96 0.0013.00
enrichAnalysis000
repCorr000
repDistRank000