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Package 101/472HostnameOS / ArchBUILDCHECKBUILD BIN
CNTools 1.9.0
J. Zhang
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CNTools
Last Changed Rev: 54802 / Revision: 56351
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: CNTools
Version: 1.9.0
Command: mkdir CNTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNTools_1.9.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CNTools.buildbin-libdir
StartedAt: 2011-06-22 06:07:03 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 06:07:11 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 7.8 seconds
RetCode: 0
Status:  OK 
PackageFile: CNTools_1.9.0.tgz
PackageFileSize: 1.114 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=CNTools.buildbin-libdir CNTools_1.9.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CNTools’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c getratios.c -o getratios.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNTools.so getratios.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c getratios.c -o getratios.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNTools.so getratios.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c getratios.c -o getratios.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNTools.so getratios.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/x86_64
** R
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘HowTo.Rnw’ 
** testing if installed package can be loaded
Creating a generic function for "genefilter" from package "genefilter" in package “CNTools”

* DONE (CNTools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNTools.buildbin-libdir/CNTools/libs/i386/CNTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "CNTools.buildbin-libdir/CNTools/libs/i386/CNTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/i386/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/i386/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "CNTools.buildbin-libdir/CNTools/libs/i386/CNTools.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNTools.buildbin-libdir/CNTools/libs/ppc/CNTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "CNTools.buildbin-libdir/CNTools/libs/ppc/CNTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/ppc/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/ppc/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "CNTools.buildbin-libdir/CNTools/libs/ppc/CNTools.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNTools.buildbin-libdir/CNTools/libs/x86_64/CNTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "CNTools.buildbin-libdir/CNTools/libs/x86_64/CNTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/x86_64/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "CNTools.buildbin-libdir/CNTools/libs/x86_64/CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "CNTools.buildbin-libdir/CNTools/libs/x86_64/CNTools.so"