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Package 233/444HostnameOS / ArchBUILDCHECKBUILD BIN
les 1.1.7
Julian Gehring
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/les
Last Changed Rev: 53607 / Revision: 53825
Last Changed Date: 2011-03-11 04:38:09 -0800 (Fri, 11 Mar 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ WARNINGS ] OK 

Summary

Package: les
Version: 1.1.7
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch les_1.1.7.tar.gz
StartedAt: 2011-03-17 16:42:37 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:43:57 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 80.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: les.Rcheck
Warnings: 2

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'les/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'les' version '1.1.7'
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'les' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.utf8") :
  OS reports request to set locale to "en_US.utf8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale

 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck/00check.log'
for details

les.Rcheck/00install.out:

* installing *source* package 'les' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "les"
Creating a new generic function for "summary" in "les"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (les)

les.Rcheck/les-Ex.timings:

nameusersystemelapsed
Les-class0.0010.0000.001
Les0.0260.0020.028
chi2000
ci20.788 0.10620.896
estimate2.3210.0092.330
export0.0010.0000.000
les-package27.555 0.14527.702
plot2.4490.0032.452
regions2.3580.0022.359
threshold2.3740.0012.375
weighting0.0060.0010.006