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Package 175/444HostnameOS / ArchBUILDCHECKBUILD BIN
genomeIntervals 1.7.4
Julien Gagneur
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genomeIntervals
Last Changed Rev: 53402 / Revision: 53825
Last Changed Date: 2011-03-03 05:44:37 -0800 (Thu, 03 Mar 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: genomeIntervals
Version: 1.7.4
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch genomeIntervals_1.7.4.tar.gz
StartedAt: 2011-03-17 16:24:57 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:26:17 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 79.3 seconds
RetCode: 0
Status:  OK 
CheckDir: genomeIntervals.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/genomeIntervals.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'genomeIntervals/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomeIntervals' version '1.7.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomeIntervals' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'benchmarking-tests.R'
  Comparing 'benchmarking-tests.Rout' to 'benchmarking-tests.Rout.save' ...12a13,19
> 
> Welcome to Bioconductor
> 
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
> 
  Running 'consistency-tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

genomeIntervals.Rcheck/00install.out:

* installing *source* package 'genomeIntervals' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "sort" in "genomeIntervals"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomeIntervals)

genomeIntervals.Rcheck/genomeIntervals-Ex.timings:

nameusersystemelapsed
GenomeIntervals-constructor0.1370.0020.139
Genome_intervals-class0.0840.0010.084
Genome_intervals_stranded-class0.0910.0020.092
c.Genome_intervals0.0950.0020.097
core_annotated0.0510.0010.051
distance_to_nearest-methods0.3240.0010.325
getGffAttribute0.3920.0470.438
interval_overlap-methods0.1920.0010.193
interval_set_operations-methods1.4540.0021.457
parseGffAttributes0.0460.0000.047
readGFF30.0620.0010.063