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Package 85/444HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.5.0
Stephen Nyangoma
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clippda
Last Changed Rev: 52445 / Revision: 53825
Last Changed Date: 2011-02-03 21:05:38 -0800 (Thu, 03 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: clippda
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch clippda_1.5.0.tar.gz
StartedAt: 2011-03-17 16:00:11 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:07:24 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 433.3 seconds
RetCode: 0
Status:  OK 
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/clippda.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.0880.0050.093
aclinicalProteomicsData-methods0.3270.2550.582
betweensampleVariance4.8770.0714.949
checkNo.replicates0.2970.0210.318
clippda-package166.472 10.112176.590
fisherInformation0.1060.0020.108
liverRawData0.0210.0010.021
liver_pheno0.0020.0000.002
liverdata5.1420.1575.299
mostSimilarTwo0.0030.0000.003
negativeIntensitiesCorrection1.6850.0141.700
phenoDataFrame0.0810.0030.084
pheno_urine0.0020.0000.002
preProcRepeatedPeakData4.4210.0904.511
proteomicsExprsData0.4140.0060.420
proteomicspData0.0820.0030.085
replicateCorrelations9.3900.4469.836
sampleClusteredData1.7100.0011.712
sampleSize 99.222 5.862105.087
sampleSize3DscatterPlots0.0700.0010.073
sampleSizeContourPlots0.0480.0010.049
sampleSizeParameters50.166 3.12653.293
sample_technicalVariance12.510 0.73313.243
spectrumFilter4.1600.1674.327