Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 361/444HostnameOS / ArchBUILDCHECKBUILD BIN
Rmagpie 1.7.0
Camille Maumet
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rmagpie
Last Changed Rev: 50295 / Revision: 53825
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: Rmagpie
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Rmagpie_1.7.0.tar.gz
StartedAt: 2011-03-17 17:20:46 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 17:22:36 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 110.2 seconds
RetCode: 0
Status:  OK 
CheckDir: Rmagpie.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Rmagpie.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Rmagpie/DESCRIPTION' ... OK
* this is package 'Rmagpie' version '1.7.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rmagpie' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Rmagpie.Rcheck/00install.out:

* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rmagpie)

Rmagpie.Rcheck/Rmagpie-Ex.timings:

nameusersystemelapsed
classifyNewSamples-methods2.4990.0382.539
experiment-class0.0800.0020.083
finalClassifier-class0.1680.0020.171
findFinalClassifier-methods0.2080.0020.211
geneSubsets-class0.0160.0000.015
getDataset-methods0.0170.0000.017
getFeatureSelectionOptions-methods0.0140.0000.015
getFinalClassifier0.2480.0640.312
getResults-methods7.9440.0748.017
plotErrorsFoldTwoLayerCV-methods7.9540.0267.981
plotErrorsRepeatedOneLayerCV1.4520.0101.462
plotErrorsSummaryOneLayerCV-methods1.4360.0071.443
rankedGenesImg-methods000
runOneLayerExtCV-methods1.2460.0071.253
runTwoLayerExtCV-methods14.20 0.0614.26
setDataset-methods0.0010.0010.000
setFeatureSelectionOptions-methods0.0190.0010.020
thresholds-class0.0020.0000.003
vV70genes0.0070.0000.007