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Package 256/444HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.3.1
Reid F. Thompson
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MassArray
Last Changed Rev: 51089 / Revision: 53825
Last Changed Date: 2010-11-28 16:18:04 -0800 (Sun, 28 Nov 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: MassArray
Version: 1.3.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MassArray_1.3.1.tar.gz
StartedAt: 2011-03-17 16:48:37 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:49:46 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 68.2 seconds
RetCode: 0
Status:  OK 
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/MassArray.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.3.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.0190.0020.020
MassArrayData-class0.0010.0000.002
MassArrayFragment-class0.0010.0000.001
MassArrayPeak-class0.0010.0010.001
MassArraySpectrum-class0.0000.0000.001
ampliconPrediction2.4630.0052.469
analyzeCpGs0.2390.0010.240
bisConvert0.0000.0000.001
calcMW0.0010.0010.001
calcMeth0.0170.0000.018
calcPercentAdduct0.0730.0010.074
calcPercentConversion0.0510.0000.052
combine4.4370.0094.446
convControl0.0290.0020.030
countCGs0.0000.0000.001
createWiggle0.0150.0010.017
estimatePrimerDimer0.0850.0030.088
evaluateSNPs29.439 0.14529.585
expandSequence0.0010.0000.001
findCollisions000
findFragments0.0190.0010.020
findPeaks0.0000.0000.001
identifySNPs0.0310.0010.032
inSilicoFragmentation0.0110.0010.013
isAssayable0.0010.0000.000
numCollisions0.0010.0000.000
plot.MassArrayData0.0440.0010.044
position0.0200.0010.021
revComplement0.0010.0010.000
rnaDigest0.0070.0010.008
samples0.0330.0010.034
sum.MassArraySpectrum0.6630.0040.667