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Package 252/444HostnameOS / ArchBUILDCHECKBUILD BIN
MANOR 1.23.2
Pierre Neuvial
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MANOR
Last Changed Rev: 52478 / Revision: 53825
Last Changed Date: 2011-02-04 15:35:36 -0800 (Fri, 04 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.6) / i386 [ ERROR ] skipped  skipped 

Summary

Package: MANOR
Version: 1.23.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD build MANOR
StartedAt: 2011-03-17 13:46:28 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 13:46:51 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 22.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'MANOR/DESCRIPTION' ... OK
* preparing 'MANOR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: MANOR
Loading required package: GLAD


######################################################################################



Have fun with GLAD



For smoothing it is possible to use either

the AWS algorithm (Polzehl and Spokoiny, 2002)

or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)



If you use the package with AWS, please cite:

Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)



If you use the package with HaarSeg, please cite:

Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)



For fast computation it is recommanded to use

the daglad function with smoothfunc=haarseg



######################################################################################



New options are available in daglad: see help for details.



Attaching package: 'MANOR'

The following object(s) are masked from 'package:base':

    norm


************************************************
*** Spatial Classification with EM algorithm ***
************************************************


Data :   nb points   =       7392
  grid size =    88 rows,   84 columns

Neighborhood system :
  max neighb =           4
  Default 1st-order neighbors (horizontal and vertical)


NEM parameters :
  beta       =        1.00   |   nk                    =   5

Computing initial partition (sort variable 1) ...
  Iterations :    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   97   98   99  100  101  102  103  104  105  106  107  108  109  110  111  112  113  114  115  116  117  118  119  120  121  122  123  124  125  126  127  128  129  130  131  132  133  134  135  136  137  138  139  140  141  142  143  144  145  146  147  148  149  150  151  152  153  154  155  156  157  158  159  160  161  162  163  164  165  166  167  168  169  170  171  172  173 
  criterion NEM = 19782.898 / Ps-Like = 5035.969 / Lmix = 9250.229
  NEM converged after 173 iterations


Error: processing vignette 'MANOR.Rnw' failed with diagnostics:
 chunk 25 
Error in daglad.profileCGH(profileCGH, smoothfunc = "lawsglad", lkern = "Exponential",  : 
  Error in daglad: msize must be lower than region.size
Execution halted