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Package 128/444HostnameOS / ArchBUILDCHECKBUILD BIN
ExpressionView 1.3.0
Gabor Csardi
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ExpressionView
Last Changed Rev: 50295 / Revision: 53825
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK [ OK ]

Summary

Package: ExpressionView
Version: 1.3.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh ExpressionView_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R ExpressionView.buildbin-libdir
StartedAt: 2011-03-17 17:57:26 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 17:57:46 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 20.6 seconds
RetCode: 0
Status:  OK 
PackageFile: ExpressionView_1.3.0.tgz
PackageFileSize: 1.632 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=ExpressionView.buildbin-libdir ExpressionView_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package 'ExpressionView' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c order.cpp -o order.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c orderclusters.cpp -o orderclusters.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ExpressionView.so order.o orderclusters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/i386
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c order.cpp -o order.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c orderclusters.cpp -o orderclusters.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ExpressionView.so order.o orderclusters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/ppc
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c order.cpp -o order.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c orderclusters.cpp -o orderclusters.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ExpressionView.so order.o orderclusters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: DBI
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
Loading required package: eisa
Loading required package: isa2
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: Category
Loading required package: genefilter
Loading required package: biclust
Loading required package: MASS

Attaching package: 'MASS'

The following object(s) are masked from 'package:genefilter':

    area

Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ExpressionView)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ExpressionView.buildbin-libdir/ExpressionView/libs/i386/ExpressionView.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/i386/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/i386/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/i386/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/i386/ExpressionView.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR ExpressionView.buildbin-libdir/ExpressionView/libs/ppc/ExpressionView.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ppc/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ppc/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ppc/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ppc/ExpressionView.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64/ExpressionView.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/x86_64/ExpressionView.so"