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Package 68/444HostnameOS / ArchBUILDCHECKBUILD BIN
Category 2.17.2
Biocore Team c/o BioC user list
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Category
Last Changed Rev: 53121 / Revision: 53825
Last Changed Date: 2011-02-23 13:32:02 -0800 (Wed, 23 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: Category
Version: 2.17.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Category_2.17.2.tar.gz
StartedAt: 2011-03-17 15:50:44 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 15:53:13 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 149.3 seconds
RetCode: 0
Status:  OK 
CheckDir: Category.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Category.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Category/DESCRIPTION' ... OK
* this is package 'Category' version '2.17.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Category' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Category.Rcheck/00install.out:

* installing *source* package 'Category' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

Category.Rcheck/Category-Ex.timings:

nameusersystemelapsed
ChrBandTree-class16.784 0.21416.997
ChrMapHyperGParams-class0.0010.0000.002
ChrMapHyperGResult-class0.0000.0000.001
ChrMapLinearMParams-class0.0000.0000.001
ChrMapLinearMResult-class0.0010.0000.001
DatPkg-class0.0830.0040.087
HyperGResult-accessors1.0350.0501.086
LinearMParams-class0.0010.0000.001
LinearMResult-class0.0010.0010.001
LinearMResultBase-class0.0010.0010.001
MAPAmat12.083 0.27112.355
applyByCategory0.0030.0010.003
cateGOryMatrix0.5410.0340.575
cb_parse_band_Hs0.0000.0000.001
cb_parse_band_Mm0.0010.0000.000
findAMstats0.0010.0010.001
getPathNames0.1550.0070.162
gseattperm4.9350.0845.020
makeChrBandGraph10.901 0.08610.987
makeEBcontr0.4230.0060.429
probes2MAP0.2820.0050.287
probes2Path0.0880.0030.093
ttperm0.0270.0010.028