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Package 432/444HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.13.5
Robert Scharpf
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE
Last Changed Rev: 53654 / Revision: 53825
Last Changed Date: 2011-03-12 11:01:28 -0800 (Sat, 12 Mar 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK [ OK ]

Summary

Package: VanillaICE
Version: 1.13.5
Command: /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.13.5.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R VanillaICE.buildbin-libdir
StartedAt: 2011-03-17 18:11:18 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 18:11:30 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 11.3 seconds
RetCode: 0
Status:  OK 
PackageFile: VanillaICE_1.13.5.tgz
PackageFileSize: 2.035 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=VanillaICE.buildbin-libdir VanillaICE_1.13.5.tar.gz'
>>>>>>> 

* installing *source* package 'VanillaICE' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:IRanges':

    updateObject

================================================================================
Welcome to oligoClasses version 1.13.18
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Welcome to oligoClasses version 1.13.18
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Welcome to VanillaICE version 1.13.5

* DONE (VanillaICE)


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"