Package: KEGGdzPathwaysGEO

Version: 1.1.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.1.1.tar.gz

StartedAt: 2013-01-17 13:03:16 -0800 (Thu, 17 Jan 2013)

EndedAt: 2013-01-17 13:10:52 -0800 (Thu, 17 Jan 2013)

EllapsedTime: 455.8 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.136	0.008	0.142
GSE14762	0.296	0.028	0.326
GSE15471	0.416	0.048	0.468
GSE16515	0.204	0.036	0.240
GSE18842	0.484	0.028	0.513
GSE19188	0.636	0.116	0.750
GSE19728	0.152	0.012	0.163
GSE20153	0.120	0.016	0.137
GSE20291	0.092	0.016	0.107
GSE21354	0.136	0.016	0.149
GSE3467	0.124	0.016	0.145
GSE3585	0.052	0.000	0.052
GSE3678	0.128	0.004	0.133
GSE4107	0.164	0.016	0.178
GSE5281_EC	0.144	0.004	0.149
GSE5281_HIP	0.164	0.004	0.167
GSE5281_VCX	0.172	0.020	0.192
GSE6956AA	0.044	0.000	0.047
GSE6956C	0.052	0.004	0.056
GSE781	0.056	0.000	0.056
GSE8671	0.296	0.024	0.317
GSE8762	0.168	0.024	0.194
GSE9348	0.352	0.040	0.392
GSE9476	0.132	0.012	0.141
KEGGdzPathwaysGEO-package	0.328	0.036	0.364