metaArray 1.38.0
Hyungwon Choi
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/metaArray | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metaArray.buildbin-libdir metaArray_1.38.0.tar.gz'
>>>>>>>
* installing *source* package 'metaArray' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c contr.c -o contr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dproc.c -o dproc.o
dproc.c:33:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(expr->label, 0, sizeof(int)*nc);
˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
dproc.c:33:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(expr->label, 0, sizeof(int)*nc);
˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
int num, nr, nc;
^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dproc2.c -o dproc2.o
dproc2.c:155:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ys, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
dproc2.c:155:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ys, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
dproc2.c:156:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(rw, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
dproc2.c:156:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(rw, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
dproc2.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(res, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
dproc2.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(res, 0.0, sizeof(double)*len);
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c intcor.c -o intcor.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c lowess.c -o lowess.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mmath.c -o mmath.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c perm.c -o perm.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c poe.c -o poe.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/metaArray.buildbin-libdir/metaArray/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (metaArray)
>>>>>>>
>>>>>>> FIXING LINKS FOR metaArray.buildbin-libdir/metaArray/libs//metaArray.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"