iChip 1.14.0
Qianxing Mo
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/iChip | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iChip.buildbin-libdir iChip_1.14.0.tar.gz'
>>>>>>>
* installing *source* package 'iChip' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c iChip.c -o iChip.o
iChip.c:28:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
nprobe = (int *)R_alloc(*nrow, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:29:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
position = (int *)R_alloc(*nrow, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:30:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
score2 = (double *)R_alloc(*nrow, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:24:69: warning: unused variable 'sdsignal' [-Wunused-variable]
double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal;
^
iChip.c:24:61: warning: unused variable 'sdnoise' [-Wunused-variable]
double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal;
^
iChip.c:193:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
score2 = (double *)R_alloc(*nrow,sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:188:20: warning: unused variable 'j' [-Wunused-variable]
int sampleSize,i,j,r,nnoise,nsignal,state,nrowm1,sumxx,rm1;
^
iChip.c:404:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x = (int **)R_alloc(*xrow,sizeof(int *));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:405:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
y = (int **)R_alloc(*xrow,sizeof(int *));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:411:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x[i] = (int *)R_alloc(*xcol, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:412:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
y[i] = (int *)R_alloc(*ycol, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iChip.c:466:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
J = (int *)R_alloc(*klen,sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
12 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o iChip.so iChip.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/iChip.buildbin-libdir/iChip/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iChip)
>>>>>>>
>>>>>>> FIXING LINKS FOR iChip.buildbin-libdir/iChip/libs//iChip.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"