Package: HilbertVis

Version: 1.18.0

Command: rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVis.buildbin-libdir

StartedAt: 2013-05-01 12:31:36 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 12:31:47 -0700 (Wed, 01 May 2013)

EllapsedTime: 11.1 seconds

RetCode: 0

Status:  OK

PackageFile: HilbertVis_1.18.0.tgz

PackageFileSize: 1016 KiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVis.buildbin-libdir HilbertVis_1.18.0.tar.gz'
>>>>>>> 

* installing *source* package 'HilbertVis' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c hilbert.c -o hilbert.o
hilbert.c:20:46: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
         case 1: { return (coord) { c.x, c.y + ( 1l << (lv-1) ) }; }
                                  ˜      ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
hilbert.c:21:41: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
         case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; }
                                  ˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
hilbert.c:21:65: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
         case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; }
                                  ˜                         ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
hilbert.c:22:50: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
         case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; }
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
hilbert.c:22:78: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
         case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; }
                                  ˜                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c make_wiggle_vector.c -o make_wiggle_vector.o
make_wiggle_vector.c:10:26: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
   memset( REAL(res), 0, length(res) * sizeof(double) );
                         ^˜˜˜˜˜˜˜˜˜˜ ˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1029:20: note: expanded from macro 'length'
#define length(x)               Rf_length(x)
                                ^˜˜˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
make_wiggle_vector.c:10:26: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
   memset( REAL(res), 0, length(res) * sizeof(double) );
                         ^˜˜˜˜˜˜˜˜˜˜ ˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1029:20: note: expanded from macro 'length'
#define length(x)               Rf_length(x)
                                ^˜˜˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c shrink_vector.c -o shrink_vector.o
shrink_vector.c:76:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ˜˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
shrink_vector.c:76:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ˜˜˜  ^˜˜
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/HilbertVis.buildbin-libdir/HilbertVis/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertVis)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"