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Package 135/671HostnameOS / ArchBUILDCHECKBUILD BIN
CNAnorm 1.6.0
Stefano Berri
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/CNAnorm
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: CNAnorm
Version: 1.6.0
Command: rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
StartedAt: 2013-05-01 12:15:58 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:16:03 -0700 (Wed, 01 May 2013)
EllapsedTime: 5.0 seconds
RetCode: 0
Status:  OK 
PackageFile: CNAnorm_1.6.0.tgz
PackageFileSize: 650.2 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package 'CNAnorm' ...
** libs
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c daxpy.f -o daxpy.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c ddot.f -o ddot.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dgbfa.f -o dgbfa.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dgbsl.f -o dgbsl.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dscal.f -o dscal.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dsmooth.f -o dsmooth.o
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dsmooth.f:62.21:

       do 10 i=1,n-1                                                    
                    1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function 'amed3':
dsmooth.f:50: warning: '__result_amed3' may be used uninitialized in this function
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c idamax.f -o idamax.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNAnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"