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Package 441/658HostnameOS / ArchBUILDCHECKBUILD BIN
occugene 1.19.0
Oliver Will
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/occugene
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: occugene
Version: 1.19.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings occugene_1.19.0.tar.gz
StartedAt: 2013-03-25 03:27:50 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:28:16 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 26.0 seconds
RetCode: 0
Status:  OK 
CheckDir: occugene.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/occugene.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘occugene/DESCRIPTION’ ... OK
* this is package ‘occugene’ version ‘1.19.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘occugene’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
loadAnnotation: warning in read.table(fileName, head = T): partial
  argument match of 'head' to 'header'
loadInsertions: warning in read.table(fileName, head = T): partial
  argument match of 'head' to 'header'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/occugene.Rcheck/00check.log’
for details.

occugene.Rcheck/00install.out:

* installing *source* package ‘occugene’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘occugene.Rnw’ 
** testing if installed package can be loaded
* DONE (occugene)

occugene.Rcheck/occugene-Ex.timings:

nameusersystemelapsed
binHist0.0080.0000.008
binInsert0.0040.0000.005
binInsertHist0.0040.0040.006
checkFormat0.0360.0040.042
delta00.0960.0000.096
eMult0.8800.0080.888
etDelta0.0240.0040.028
fCumul0.0080.0000.010
fFit0.0960.0000.096
loadAnnotation0.0080.0000.009
loadInsertions0.0120.0000.010
occup2Negenes0.0160.0040.020
unbiasB00.8520.0040.854
unbiasDelta00.9760.0000.975
varMult0.9320.0000.981