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Package 215/658HostnameOS / ArchBUILDCHECKBUILD BIN
ffpe 1.3.0
Levi Waldron
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ffpe
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: ffpe
Version: 1.3.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings ffpe_1.3.0.tar.gz
StartedAt: 2013-03-25 01:31:50 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:41:14 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 564.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ffpe.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ffpe/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ffpe’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ffpe’ can be installed ... [51s/53s] WARNING
Found the following significant warnings:
  Warning: no function found corresponding to methods exports from ‘minfi’ for: ‘pData’
  Warning: no function found corresponding to methods exports from ‘minfi’ for: ‘pData’
See ‘/home/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [68s/69s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
CATplot      23.686  0.444  24.467
ffpe-package  6.288  0.144   6.894
sampleQC      6.156  0.100   6.275
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck/00check.log’
for details.

ffpe.Rcheck/00install.out:

* installing *source* package ‘ffpe’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: no function found corresponding to methods exports from ‘minfi’ for: ‘pData’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘ffpe.Rnw’ 
** testing if installed package can be loaded
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: no function found corresponding to methods exports from ‘minfi’ for: ‘pData’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
* DONE (ffpe)

ffpe.Rcheck/ffpe-Ex.timings:

nameusersystemelapsed
CATplot23.686 0.44424.467
ffpe-package6.2880.1446.894
sampleQC6.1560.1006.275
sortedIqrPlot2.9050.0843.051