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Package 130/658HostnameOS / ArchBUILDCHECKBUILD BIN
clusterStab 1.31.0
James W. MacDonald
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clusterStab
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: clusterStab
Version: 1.31.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch clusterStab_1.31.0.tar.gz
StartedAt: 2013-03-25 01:51:15 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:52:04 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 49.1 seconds
RetCode: 0
Status:  OK 
CheckDir: clusterStab.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/clusterStab.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'clusterStab/DESCRIPTION' ... OK
* this is package 'clusterStab' version '1.31.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'clusterStab' can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'clusterStab/R/zzz.R':
  .First.lib calls:
    require(Biobase)

Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.

do.benhur: warning in matrix(placeone, nr = m.dim, nc = m.dim): partial
  argument match of 'nr' to 'nrow'
do.benhur: warning in matrix(placeone, nr = m.dim, nc = m.dim): partial
  argument match of 'nc' to 'ncol'
do.benhur: warning in matrix(placeone, nr = m.dim, nc = m.dim, byrow =
  TRUE): partial argument match of 'nr' to 'nrow'
do.benhur: warning in matrix(placeone, nr = m.dim, nc = m.dim, byrow =
  TRUE): partial argument match of 'nc' to 'ncol'
do.benhur: warning in matrix(placetwo, nr = m.dim, nc = m.dim): partial
  argument match of 'nr' to 'nrow'
do.benhur: warning in matrix(placetwo, nr = m.dim, nc = m.dim): partial
  argument match of 'nc' to 'ncol'
do.benhur: warning in matrix(placetwo, nr = m.dim, nc = m.dim, byrow =
  TRUE): partial argument match of 'nr' to 'nrow'
do.benhur: warning in matrix(placetwo, nr = m.dim, nc = m.dim, byrow =
  TRUE): partial argument match of 'nc' to 'ncol'
show,ClusterComp: warning in matrix(paste(round(object@percent, 0),
  "%", sep = ""), nr = 1): partial argument match of 'nr' to 'nrow'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/clusterStab.Rcheck/00check.log'
for details.

clusterStab.Rcheck/00install.out:

* installing *source* package 'clusterStab' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'clusterStab.Rnw' 
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'clusterStab'
* DONE (clusterStab)

clusterStab.Rcheck/clusterStab-Ex.timings:

nameusersystemelapsed
benhur0.3920.0370.430
clusterComp0.2130.0290.242