Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 40/658HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.33.0
Alexandre Kuhn
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/annotationTools
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: annotationTools
Version: 1.33.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings annotationTools_1.33.0.tar.gz
StartedAt: 2013-03-25 00:01:58 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:02:48 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 50.0 seconds
RetCode: 0
Status:  OK 
CheckDir: annotationTools.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/annotationTools.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘annotationTools/DESCRIPTION’ ... OK
* this is package ‘annotationTools’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘annotationTools’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... NOTE
prepare_Rd: compactList.Rd:22: Dropping empty section \references
prepare_Rd: getANNOTATION.Rd:31: Dropping empty section \references
prepare_Rd: getGENEID.Rd:32: Dropping empty section \references
prepare_Rd: getGENEONTOLOGY.Rd:35: Dropping empty section \references
prepare_Rd: getGENESYMBOL.Rd:32: Dropping empty section \references
prepare_Rd: getGENETITLE.Rd:32: Dropping empty section \references
prepare_Rd: getHOMOLOG.Rd:40: Dropping empty section \references
prepare_Rd: getMULTIANNOTATION.Rd:29: Dropping empty section \references
prepare_Rd: getOrthologousProbesets.Rd:28: Dropping empty section \references
prepare_Rd: getPROBESET.Rd:32: Dropping empty section \references
prepare_Rd: listToCharacterVector.Rd:20: Dropping empty section \references
prepare_Rd: ps2ps.Rd:27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/annotationTools.Rcheck/00check.log’
for details.

annotationTools.Rcheck/00install.out:

* installing *source* package ‘annotationTools’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘annotationTools.Rnw’ 
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package ‘annotationTools’
* DONE (annotationTools)

annotationTools.Rcheck/annotationTools-Ex.timings:

nameusersystemelapsed
compactList0.0160.0000.015
getANNOTATION0.0160.0080.022
getGENEID0.0440.0080.049
getGENEONTOLOGY0.0520.0000.050
getGENESYMBOL0.0360.0000.034
getGENETITLE0.0360.0000.038
getHOMOLOG0.0440.0040.047
getMULTIANNOTATION0.0200.0000.019
getOrthologousProbesets0.1120.0040.114
getPROBESET0.0520.0040.056
listToCharacterVector0.1360.0000.138
ps2ps0.0080.0000.009