Package: DTA

Version: 2.5.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.5.1.tar.gz

StartedAt: 2013-03-24 04:35:56 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 04:44:58 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 541.9 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.5.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DTA' can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is 11.3Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    4.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [474s/483s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 171.121 23.067 201.063
DTA.estimate         106.843  7.389 115.204
DTA.generate          91.882  6.209  98.647
DTA.dynamic.estimate  60.725  0.731  61.894
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck/00check.log'
for details.

* installing *source* package 'DTA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'DTA.Rnw' 
** testing if installed package can be loaded
* DONE (DTA)

name	user	system	elapsed
DTA-package	0.007	0.000	0.007
DTA.dynamic.estimate	60.725	0.731	61.894
DTA.dynamic.generate	171.121	23.067	201.063
DTA.estimate	106.843	7.389	115.204
DTA.generate	91.882	6.209	98.647
DTA.map.it	0.003	0.006	0.009
DTA.normalize	0.003	0.005	0.008
DTA.phenomat	0.004	0.007	0.012
DTA.plot.it	0.044	0.073	0.491
tls	2.372	1.107	3.573