Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 93/658HostnameOS / ArchBUILDCHECKBUILD BIN
BUS 1.15.0
Yuanhua Liu
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BUS
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: BUS
Version: 1.15.0
Command: rm -rf BUS.buildbin-libdir && mkdir BUS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUS_1.15.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BUS.buildbin-libdir
StartedAt: 2013-03-25 05:19:29 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 05:19:36 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 6.6 seconds
RetCode: 0
Status:  OK 
PackageFile: BUS_1.15.0.tgz
PackageFileSize: 1.821 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BUS.buildbin-libdir BUS_1.15.0.tar.gz'
>>>>>>> 

* installing *source* package 'BUS' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c BUS.cpp -o BUS.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BUS.so BUS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BUS.buildbin-libdir/BUS/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'bus.rnw' 
** testing if installed package can be loaded
* DONE (BUS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BUS.buildbin-libdir/BUS/libs/i386/BUS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BUS.buildbin-libdir/BUS/libs/i386/BUS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BUS.buildbin-libdir/BUS/libs/i386/BUS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BUS.buildbin-libdir/BUS/libs/i386/BUS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BUS.buildbin-libdir/BUS/libs/i386/BUS.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=BUS.buildbin-libdir --libs-only BUS_1.15.0.tar.gz'
>>>>>>> 

* installing *source* package 'BUS' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c BUS.cpp -o BUS.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BUS.so BUS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BUS.buildbin-libdir/BUS/libs/x86_64
* DONE (BUS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BUS.buildbin-libdir/BUS/libs/x86_64/BUS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BUS.buildbin-libdir/BUS/libs/x86_64/BUS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BUS.buildbin-libdir/BUS/libs/x86_64/BUS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BUS.buildbin-libdir/BUS/libs/x86_64/BUS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BUS.buildbin-libdir/BUS/libs/x86_64/BUS.so"