Package: ggtut

Version: 0.0.42

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ggtut_0.0.42.tar.gz

StartedAt: 2012-06-21 14:36:29 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 14:48:05 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 696.2 seconds

RetCode: 0

Status:  OK

CheckDir: ggtut.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/ggtut.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ggtut/DESCRIPTION' ... OK
* this is package 'ggtut' version '0.0.42'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ggtut' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 190.6Mb
  sub-directories of 1Mb or more:
    bam          15.1Mb
    data         22.3Mb
    doc           8.2Mb
    ffarchives  129.9Mb
    ffobjects     1.6Mb
    images       12.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFixedBFL: warning in dir(system.file("bam", package = "ggtut"), patt
  = "bam$", full = TRUE): partial argument match of 'patt' to 'pattern'
getFixedBFL: warning in dir(system.file("bam", package = "ggtut"), patt
  = "bam$", full = TRUE): partial argument match of 'full' to
  'full.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/ggtut.Rcheck/00check.log'
for details.

* installing *source* package 'ggtut' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'space' when loading 'IRanges'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'space' when loading 'IRanges'

* DONE (ggtut)

name	user	system	elapsed
c17imp	2.224	0.130	2.383
g17rngsnr	0.126	0.006	0.138
ggtut-package	0.836	0.025	0.870
observed17ceu	0.382	0.030	0.456
rules.n43	9.726	0.344	10.221
snpgr17	1.804	0.105	2.197