Package: dsQTL

Version: 0.0.13

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch dsQTL_0.0.13.tar.gz

StartedAt: 2012-06-21 14:20:36 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 14:29:03 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 506.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: dsQTL.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/dsQTL.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'dsQTL/DESCRIPTION' ... OK
* this is package 'dsQTL' version '0.0.13'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'dsQTL' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 273.3Mb
  sub-directories of 1Mb or more:
    data   259.4Mb
    parts   13.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getSNPlocs: no visible binding for global variable 'ch2locs'
* checking Rd files ... NOTE
prepare_Rd: dsQTL-package.Rd:49-50: Dropping empty section \seealso
prepare_Rd: dsQTL-package.Rd:51-52: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'ndhs17'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'GGtools'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/dsQTL.Rcheck/00check.log'
for details.

* installing *source* package 'dsQTL' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'dsq.Rnw' 
** testing if installed package can be loaded

* DONE (dsQTL)